Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00338 ATGGAGAAGAGTGAGAATTGTTGTTCCACTCAGCTTATTGATGGAGATGGTACATTCAATGTTGCCGGGATTGAAAACTTCATGAAGGAGGTTAATTTACGTGACTTTGGACTTTCCTACGCTGTAGTTTCCATTATGGGTCCACAAAGTAGTGGCAAGAGCACGCTAGTAAATCATTTGTTTGCTACAAACTTCAGAGAGATGGATGCATTTACGGGAAGGTCTCAAACAACCAAAGGAATTTGGATGGCTAGATGTGTTGGCATAGAGCCTTGTACACTTGTGATGGATTTGGAGGGTACAGATGGAAGAGAACGCGGAGAGGATGATACTGCATTTGAAAAGCAGAGTGCATTATTTGCTTTGGCTGTTTCCGATATAGTGCTAATAAACATGTGGTGTCACGACATCGGCCGGGAGCAAGCTGCAAATAAGCCACTTTTAAAAACTGTGTTTCAGGTCATGATGAGATTGTTTAGTCCACGCAAAACAACATTGCTGTTTGTCATACGTGATAAAACAAAGACACCACTTGAAAATTTAGAGCCTGTGTTGCGAGAAGATATTCAGAAGATATGGGACTCTGTTCCTAAACCAGAGGCCCATAAGGAAACCCCACTAAGTGAATTTTTCAATGTTGAAGTTGTTGCTCTTTCTAGTTTTGAAGAAAAGGAAGAGCAATTTAAGGAGCAGGTTGCCAGCTTAAGGCAACGCTTCTATCATTCTATTGCTCCTGGTGGGCTTGCGGGGGATCGACGTGGAGCAGTTCCTGCTTCAGGCTTTTCATTTAGTGCTCAGGAAATCTGGAAAATCATTAAGGAGAACAAGGATCTCGACCTTCCTGCACACAAGGTCATGGTTGCTACTGTACGATGTGAAGAAATTGCCAATGAGAAATATGCCTTTTTTGTTGCAAATGAGGACTGGCATCAGTTGGAAGAGGCTGTGCAATCTGGCCCTATTTCTGGATTTGGGAAAAAGCTCAATTCACTCCTTAATGCTTGTCTTTCAGAGTATGATGTTGAAGCTACTTATTTTGATGAAGGTGTGAGATCTGCAAAACAAAAGCAGCTTCAAGAAAAATTGTTGCAACTTGTCCAACCAGCATTCCAAATTGCACTTGGACATGTAAGGTCTGGAACTTTGGATAAGTTCAAGGAAGCATTTGACAAGGCTTTGAATGGAGGTGAAGGTTTTTCTGCTGCTGCGAATAATTGCATAGGGTCTTATATGGCTCAATTTGATGAAGGATGTGCAGATGTTGTTATTGAAATAGCAAACTGGGATACATCTAAATTAAGGGAGAAACTGCAGCGTGATATTGATGCACACATTGCATCTGTACGTGGGGCTAAGATGTCAGAACTTACTTCATCATATGAGGAAAAACTGAGGAAGGCCTTGTCTGGACCTGTTGAAACTCTTTTGGATGGAGCTAATAGTGATACTTGGCCATCAATAAGGAAACTTCTCAAACGAGAGACTGAATCAGCTGTTTCGGAGTTCTCTGCTGCACTTACCAGATTTGATGTGGATGAACAAACAAGAGAGATCATGATTGTGAGTTTGGAGGATTATGCAAAGGGTGTGATAGAAGCAAAGGCAAGGGAAGAAGCTGGCCGAGTTCTAATCCGTATGAAGGACAGGTTTATGACATTGTTTGGTCATGATTCTGATTCAATGCCTCGTATTTGGACGGGAAACGAAGATATTCGATCCATCACGAAGACTGCCCGCTCTGCATCCTTGAAGTTGCTATCTGTAATGGCTGTAGTTCGTTTGGATGATGATGATGATATTGATAATATTGAGAAAACATTGACAGTTGCATTGGGGGATTCATCAAGCAGTTCTGTTAAAGATAGGAGCATCACTGCAGTTGATCCACTGGCTTCAAGCACTTGGGAACAGGTACCATCCTCAAAAACATTGATCACACCTGTCCAGTGCAAATCTTTGTGGAGGCAATTCAAGATGGAGACAGAATATAGTGTCTCTCAGGCCATTTCTGCACAGGAGGCCAACAAGCGTAATAACAACTGGTTACCTCCACCATGGGCGATTGTTGCTTTGGTTATTCTGGGATTTAATGAATTTATGACACTTTTAAGAAATCCCTTGTATTTGGGTGTCATCTTTGTTGGTTATCTTCTCATAAAAGCCCTATGGGCGCAGCTTGACATTTCGGGTGAATTTCGCAATGGAGCTCTTCCGGGAATCATATCCTTGTCTACCAAGCTTGTTCCAACTATCATGAACCTTATCAGAAATCTAGCAGAGGAGGGACAGAACCCTGCAACTAACAATCCTCAGAGAAATCCACCAAAAAGAAATCGTGATAATGTTACTGCTGGTAGTGCTGTGTCATCTAATGCTTCATCTGATGTAATTTCATCGGACAAAGGAACCGAGTATACCAGTGCATCAAAACATGATTAG 2439 0.419 MEKSENCCSTQLIDGDGTFNVAGIENFMKEVNLRDFGLSYAVVSIMGPQSSGKSTLVNHLFATNFREMDAFTGRSQTTKGIWMARCVGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLENLEPVLREDIQKIWDSVPKPEAHKETPLSEFFNVEVVALSSFEEKEEQFKEQVASLRQRFYHSIAPGGLAGDRRGAVPASGFSFSAQEIWKIIKENKDLDLPAHKVMVATVRCEEIANEKYAFFVANEDWHQLEEAVQSGPISGFGKKLNSLLNACLSEYDVEATYFDEGVRSAKQKQLQEKLLQLVQPAFQIALGHVRSGTLDKFKEAFDKALNGGEGFSAAANNCIGSYMAQFDEGCADVVIEIANWDTSKLREKLQRDIDAHIASVRGAKMSELTSSYEEKLRKALSGPVETLLDGANSDTWPSIRKLLKRETESAVSEFSAALTRFDVDEQTREIMIVSLEDYAKGVIEAKAREEAGRVLIRMKDRFMTLFGHDSDSMPRIWTGNEDIRSITKTARSASLKLLSVMAVVRLDDDDDIDNIEKTLTVALGDSSSSSVKDRSITAVDPLASSTWEQVPSSKTLITPVQCKSLWRQFKMETEYSVSQAISAQEANKRNNNWLPPPWAIVALVILGFNEFMTLLRNPLYLGVIFVGYLLIKALWAQLDISGEFRNGALPGIISLSTKLVPTIMNLIRNLAEEGQNPATNNPQRNPPKRNRDNVTAGSAVSSNASSDVISSDKGTEYTSASKHD* 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00338 812 Gene3D - 17 252 IPR027417 -
Rops7g00338 812 MobiDBLite consensus disorder prediction 759 812 - -
Rops7g00338 812 Pfam Root hair defective 3 GTP-binding protein (RHD3) GTPase domain 46 281 - -
Rops7g00338 812 ProSiteProfiles GB1/RHD3-type guanine nucleotide-binding (G) domain profile. 37 252 IPR030386 GO:0005525
Rops7g00338 812 Coils Coil 218 238 - -
Rops7g00338 812 MobiDBLite consensus disorder prediction 760 804 - -
Rops7g00338 812 CDD GBP 34 242 - -
Rops7g00338 812 Hamap Protein SEY1 [SEY1]. 9 763 IPR008803 -
Rops7g00338 812 FunFam Protein ROOT HAIR DEFECTIVE 3 homolog 18 273 - -
Rops7g00338 812 Pfam Sey1 three-helix bundle domain 323 761 IPR046758 -
Rops7g00338 812 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 247 IPR027417 -
Rops7g00338 812 PANTHER PROTEIN SEY1 5 792 IPR008803 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00338 Rops-Chr7 4425146 4435042 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00338 K22698 - gmx:100797516 1330.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00338 7 4425146 4435042 Rops4g02003 4 46118913 46127414 PCT