Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02003 ATGTCTGAGATCGCCCCTTGCTTTTCTCTCTTTCGATCTTCCTTACCGCATTTCTCAACAACCATTTCCAATTCCACGCTAATGGCAAATGGTGATAGTTGTTGTTCAACTCAGCTTATTGATGGAGATGGTACATTCAATGTTTCCGGGATTGAAAACTTTATGAAGGAGGTGAAATTGCGTGAATGTGGGCTTTCATATGCTGTGGTTTCTATAATGGGTCCACAAAGTAGTGGCAAGAGCACACTATTAAACAATTTGTTTCATACCAACTTCAGAGAGATGGATGCTTTTAAGGGGAGGTCTCAAACTACCAAAGGAATCTGGATGGCTAAATGTACCGGAATAGAGCCTTGCACACTTGTGATGGATTTGGAGGGTACAGATGGAAGAGAACGTGGAGAGGATGATACTGCATTTGAAAAGCAGAGTGCTCTGTTTGCTCTTGCTGTCTCAGATATAGTGCTAATAAACATGTGGTGCCATGACATTGGCCGTGAGCAAGCTGCAAATAAGCCACTTTTGAAAACCGTCTTTCAGGTCATGATGAGACTGTTTAGTCCACGCAAAACAACATTGTTGTTTGTCATACGTGATAAAACAAGGACACCACTCGAAAATTTAGAACCAGTTTTGCGAGAAGATATCCAGAAGATATGGGATTCTGTTCCTAAACCACCGGCTCACAAGGAAACCCCACTAAGCGAATTTTTTAATGTTGAAGTTGTTGCCCTTTCTAGTTATGAAGAAAAGGAAGAGCAATTTAAGGAGCAGGTTGCCAGCTTGAGGCAACGATTCTATCATTCTATCGCTCCTGGTGGGCTTGCAGGGGATAGGCGTGGTGTAGTTCCTGGTTCTGGCTTTTCTTTTAGTTCTGAACACATATGGAAAGTCATTAAGGAGAACAAAGACCTCGACCTTCCTGCACATAAGGTTATGGTTGCTACTGTTCGATGTGAAGAAATTGCCAATGAGAAATATGCCTCTTTCATTGCAAATGAGGAATGGTGTCAATTGGAAGAGGATGTGCAATCTGGCCCTATTCCTGGATTTGGAAAAAAGATCAACTCCCTCCTTGGTGCTTGTTTGTCAGAGTATGATGCTGAGGCCACTTATTTTGATGAAGGTGTGAGATCTGCAAAGCAAAAGCAACTTCAAGAAAAGTTGTTGCAACTTGTTCAACCAGCATTCCAATCCGCACTAGGACATATAAGATCTGGAACTTTGGACCGATTCAAGGAGGCATTTGAAAAGGCTTTGAATGGAGGGGAAGGGTTTTCTGTGGCTGCTAATAATTGCACTGGGTCTTGTATGGCTCATTTTGATGAAGCATGTGCAGATGTTGTTATTGAACAAGCAAACTGGGATACATCTAAAGTACGGGAGAAAATGCAGCGTGATATTGATGCACATGTTGCATCTGTGCGTGCAGCTAAGATTTCTGAACTCACTTCATCATATGAGGCAAAACTGAAAGAAGCTTTGTCTGGATCTGTCGATGCTCTTTTGGATGGAGCTAATAGTGATACTTGGCCATCAATAAGGAGCCTTCTTAGGCGTGAGATTGAATCATCAGTTTCGGGGTTTTCTGCTGCACTCACTGGGTTTGATATGGATGAAGAAACAAGACAAAAAATGATTTTGAGTTTAGAGGATTATGCAAGGGGTGTGGTAGAAGGAAAGGCTAGGGAAGAAGCTGGAAGAGTTCTATTCCGTATGAAGGACAGGTTTACAATGTTATTTAGCCATGATTCTGATTCGATGCCTCGTGTTTGGACGGGGAAAGAAGATATTCGAGCCATCACCAAGACTGCTCGCTCTGCTTCTTTGAAGTTGCTATCTGTTATGGCTGCAATTCGTTTGGATGATGATGATACTGATAATATCGAGAAAACATTAGCAGTTACATTGTTGGATTCATCAAGCAGTGCTGTTAAAGATAGGAGCATCACAGCGGTTGATCCGCTAGCTTCTAGCAGTTGGGACCAGGTTCCATCCTCTAAAACATTGATCACACCTGTCCAGTGCAAATCTTTGTGGAGGCAATTCAAAACAGAGACAGAGTACAGTGTCTCTCAAGCCATTTCTGCACAGGAGGCCAACAAGCGTAATAACAACTGGTTACCTCCTCCATGGGCAATAGTTGCTTTGGTTATTTTGGGATTTAATGAATTTATGACACTTCTAAGAAATCCCTTATATTTGGGTGTCATCTTTGTTGGTTTTCTTCTCATTAAAGCCCTGTGGGTGCAGCTTGACATTTCGGGTGAATTTCGCAATGGAGCCCTTCCTGGAATCATATCTTTGTCTAGCAAGTTTGTTCCAACTATCATGAACCTTATCAAAAGACTAGCAGAGGAGGGACAGAACCCTGCAACTAACAATCCTCAGAGAAACCCTTCAACAAAAAACAATTACAATGCTGTTTCTGCTAATAGTGCTGTGTCATCTAGTTCTTCATCTAACTTAACTTCATTGGACAATGGAACCGGATATACCAGTCCATCAAAAGATGAGTAG 2520 0.4198 MSEIAPCFSLFRSSLPHFSTTISNSTLMANGDSCCSTQLIDGDGTFNVSGIENFMKEVKLRECGLSYAVVSIMGPQSSGKSTLLNNLFHTNFREMDAFKGRSQTTKGIWMAKCTGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPPAHKETPLSEFFNVEVVALSSYEEKEEQFKEQVASLRQRFYHSIAPGGLAGDRRGVVPGSGFSFSSEHIWKVIKENKDLDLPAHKVMVATVRCEEIANEKYASFIANEEWCQLEEDVQSGPIPGFGKKINSLLGACLSEYDAEATYFDEGVRSAKQKQLQEKLLQLVQPAFQSALGHIRSGTLDRFKEAFEKALNGGEGFSVAANNCTGSCMAHFDEACADVVIEQANWDTSKVREKMQRDIDAHVASVRAAKISELTSSYEAKLKEALSGSVDALLDGANSDTWPSIRSLLRREIESSVSGFSAALTGFDMDEETRQKMILSLEDYARGVVEGKAREEAGRVLFRMKDRFTMLFSHDSDSMPRVWTGKEDIRAITKTARSASLKLLSVMAAIRLDDDDTDNIEKTLAVTLLDSSSSAVKDRSITAVDPLASSSWDQVPSSKTLITPVQCKSLWRQFKTETEYSVSQAISAQEANKRNNNWLPPPWAIVALVILGFNEFMTLLRNPLYLGVIFVGFLLIKALWVQLDISGEFRNGALPGIISLSSKFVPTIMNLIKRLAEEGQNPATNNPQRNPSTKNNYNAVSANSAVSSSSSSNLTSLDNGTGYTSPSKDE* 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02003 839 CDD GBP 61 269 - -
Rops4g02003 839 ProSiteProfiles GB1/RHD3-type guanine nucleotide-binding (G) domain profile. 64 279 IPR030386 GO:0005525
Rops4g02003 839 Gene3D - 42 277 IPR027417 -
Rops4g02003 839 Pfam Sey1 three-helix bundle domain 350 787 IPR046758 -
Rops4g02003 839 FunFam Protein ROOT HAIR DEFECTIVE 3 homolog 45 300 - -
Rops4g02003 839 Hamap Protein SEY1 [SEY1]. 36 789 IPR008803 -
Rops4g02003 839 PANTHER PROTEIN SEY1 32 810 IPR008803 -
Rops4g02003 839 Pfam Root hair defective 3 GTP-binding protein (RHD3) GTPase domain 73 308 - -
Rops4g02003 839 MobiDBLite consensus disorder prediction 788 839 - -
Rops4g02003 839 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 38 303 IPR027417 -
Rops4g02003 839 Coils Coil 245 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02003 Rops-Chr4 46118913 46127414 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02003 K22698 - gmx:100777656 1421.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00338 7 4425146 4435042 Rops4g02003 4 46118913 46127414 PCT