LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops6g03562	ATGAGTTCCTCAAGGACAGTGAGGAAGTTGCAGGTTGTGTCCCCTGTTCCAGCTGACATAGACATCGCTAACTCTGTTGAACCTGTTCATATCTCTGAGATTGCCAAGGATCTCAATCTTAGTCCCGATCACTATGACCTTTATGGAAAATATAAGGCTAAGGTTTTGTTGTCTGTTCTTGATGAACTGCAAGGATCACAAGATGGGTATTATGTTGTGGTTGGAGGCATTACTCCAACTCCTCTTGGAGAAGGCAAATCCACTACTACAGTGGGGCTCTGTCAAGCTTTGGGTGCTTTTCTTGATAAAAAGGTGGTCACCTGCCTTCGTCAACCATCACAAGGGCCTACTTTTGGAATCAAAGGAGGTGCAGCTGGTGGTGGTTATAGCCAAGTGATTCCCATGGATGAATTCAATCTTCACCTGACAGGAGATATCCATGCAATAACTGCAGCAAACAATCTTCTAGCTGCTGCAATTGATACCCGAATTTTCCACGAGTCAACACAGTCAGATAAGGCTCTTTTCAACCGGTTATGCCCTCCAAATAAAGAAGGAAAAAGGAGCTTCAGTGATGTCATGTTTAGGCGTCTTAAGAAGCTTGGTATTTCAAAGACCAATCCAGATGATCTTACACCAGAAGAAGTAAATAAATTTGCTAGGCTTGATATTGACCCAGATTCTATTACATGGAGGAGAGTAATGGACATCAATGACCGATTCTTAAGAAAAATTACTATTGGCCAGGGGCCTGATGAGAAAGGAATGGTAAGAGAAACAGGATTTGATATTTCAGTTGCTAGTGAGATAATGGCTGTTTTGGCACTGACAACATCCTTAGCTGATATGCGAGAGAGGCTAGGGAAAATGGTTATTGGAAATAGCAAGAGTGGTGAACCCGTAACTGCTGATGATCTAGGTGTTGGAGGTGCTTTAACGGTTTTAATGAAGGATGCCATTCACCCTACCCTTATGCAGACTCTGGAAGGAACCCCTGTTCTTGTTCATGCAGGCCCATTTGCAAATATTGCTCATGGAAATTCTTCTATTGTGGCTGATAAGATTGCACTGAAGTTGGTGGGACCAGGTGGATTTGTAGTTACTGAAGCTGGTTTTGGTGCTGATATTGGTACCGAAAAGTTTATGAACATTAAGTGTCGATATAGTGGTTTGACACCTCAGTGCGCAATAGTTGTGGCAACAATAAGGGCACTAAAAATGCATGGTGGAGGGCCAGCAGTTGTTGCTGGAAAACCTCTCGACCATGCATATTTGACTGAAAATGTTGCTCTGGTTGAGGCTGGTTGTGTGAATATGGCACGACATATATTAAATACAAAGGCTTACGGTGTGAATGTTGTAGTTGCTATCAACAAGTTTTCAACTGACACTGAAGCTGAGCTAAATGCAGTTAGAAATGCTGCCTTAGCTGCCGGTGCTTATGATGCTGTAATTTGTAGCCATCATGCTCATGGTGGCAAAGGAGCAGTTGACCTGGGCGTTGCAGTTCAAAAAGCTTGTGAGAATGTGTCACAGCCATTAAAGTTCTTATATCCTCTGGATCTGGGTATTAAAGAGAAAATAGAGGCAATAGCAAAGTCATATGGAGCCAGTGGCGTTGAGTACTCAGAGCAGGCTGAGAAGCATATTGAGATGTATAGCAAGCAAGGATTTTCAGGACTTCCAATCTGCATGGCCAAGACTCAGTATTCTTTCTCAGACAATGCTGCAGCCAAGGGAGCTCCAGCTGGGTTTATCTTACCAATAAGAGATGTGAGAGCTAGTATAGGAGCTGGATTTATTTATCCTTTAGTTGGAACAATGAGTACGATGCCAGGGCTTCCAACAAGGCCATGCTTCTATGACATTGACCTTGATACAGCAACTGGAAAAGTCATTGGTCTTTCTTAA	1911	0.4296	MSSSRTVRKLQVVSPVPADIDIANSVEPVHISEIAKDLNLSPDHYDLYGKYKAKVLLSVLDELQGSQDGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHESTQSDKALFNRLCPPNKEGKRSFSDVMFRRLKKLGISKTNPDDLTPEEVNKFARLDIDPDSITWRRVMDINDRFLRKITIGQGPDEKGMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKSGEPVTADDLGVGGALTVLMKDAIHPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGADIGTEKFMNIKCRYSGLTPQCAIVVATIRALKMHGGGPAVVAGKPLDHAYLTENVALVEAGCVNMARHILNTKAYGVNVVVAINKFSTDTEAELNAVRNAALAAGAYDAVICSHHAHGGKGAVDLGVAVQKACENVSQPLKFLYPLDLGIKEKIEAIAKSYGASGVEYSEQAEKHIEMYSKQGFSGLPICMAKTQYSFSDNAAAKGAPAGFILPIRDVRASIGAGFIYPLVGTMSTMPGLPTRPCFYDIDLDTATGKVIGLS*	637

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops6g03562	636	Pfam	Formate--tetrahydrofolate ligase	18	636	IPR000559	GO:0004329\|GO:0005524
	Rops6g03562	636	FunFam	Methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like	167	232	-	-
	Rops6g03562	636	FunFam	C-1-tetrahydrofolate synthase, cytoplasmic	17	175	-	-
	Rops6g03562	636	Hamap	Formate--tetrahydrofolate ligase [fhs].	16	636	IPR000559	GO:0004329\|GO:0005524
	Rops6g03562	636	Gene3D	Formyltetrahydrofolate synthetase, domain 3	523	611	-	-
	Rops6g03562	636	ProSitePatterns	Formate--tetrahydrofolate ligase signature 2.	399	410	IPR020628	GO:0005524
	Rops6g03562	636	Gene3D	-	15	166	IPR027417	-
	Rops6g03562	636	Gene3D	-	270	522	IPR027417	-
	Rops6g03562	636	FunFam	C-1-tetrahydrofolate synthase, cytoplasmic isoform X2	250	522	-	-
	Rops6g03562	636	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	19	633	IPR027417	-
	Rops6g03562	636	ProSitePatterns	Formate--tetrahydrofolate ligase signature 1.	119	129	IPR020628	GO:0005524
	Rops6g03562	636	FunFam	Putative formate--tetrahydrofolate ligase	523	611	-	-
	Rops6g03562	636	FunFam	Formate--tetrahydrofolate ligase	216	315	-	-
	Rops6g03562	636	Gene3D	-	167	232	-	-
	Rops6g03562	636	CDD	FTHFS	31	635	IPR000559	GO:0004329\|GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops6g03562	Rops-Chr6	60545376	60550272	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops6g03562	K01938		-	gmx:100806844	1177.54

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Rops6g03562	6	60545376	60550272	Rops6g03562	6	60545376	60550272	ECH
	Rops6g03562	6	60545376	60550272	Rops7g01948	7	32275236	32278436	ECH