Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03071 ATGAAGCTTCGGAGATCCTCGCTGGGTTTGTTTCTAGGGTTTCTGTTACTGTCCTTGACGCCGTCGTCAATGGCGAGATTCGTGGTGGAGAAGAACAGTTTGACGGTGACGTCACCGGAGAAGATCAAGGGCACGCACGATAGTGCTATTGGCAACTTTGGGATACCCCAATATGGAGGTAGCATGGCTGGGAACGTTGTGTACCCTAAGGATAATCACAAGGGTTGCAAGGAGTTCGACGAGTTTGGGATTTCCTTCAAATCCAAACCTGGAGCTCTTCCCACTATCGTTTTGCTCGATCGTGGAAGTTGCTTCTTTGCTTTGAAGGTCTGGAATGCCCAGAAGGCTGGAGCTTCTGCTGTTCTTGTTGCGGATGATATTGAGGAAAAATTAATAACCATGGACACACCTGAAGAGGAGAGATCATCTGCAAAATACATTGAGAACATAACAATACCATCAGCTCTTATTGAAAAAAGTTTTGGTGAAAAATTAAAAAGTGCCATAAGTAGTGGGGAAATGGTCAATGTAAATCTTGATTGGAGAGAGGCTGTCCCCCACCCAGATGATCGGGTGGAGTATGAGTTGTGGACCAACAGCAATGATGAGTGTGGAGTTAAATGTGATATGTTGATGGAATTTGTGAAGGATTTTAAGGGTGTGGCACAGATATTAGAGAAAGGTGGTTATACTCAGTTTACACCCCATTATATAACCTGGTACTGTCCTCAAGCATTCACGTTAAGCAAACAGTGCAAGTCCCAGTGCATAAATCATGGAAGATATTGCGCTCCAGATCCTGAGCAGGACTTTAGCACTGGTTATGATGGGAAAGATGTGGTTGTTGAAAATTTAAGGCAGCTATGTGTTTTCAAGGTGGCAAATGAAACCAAAAAGCCTTGGGTGTGGTGGGACTATGTTACTGATTTTCAAATTAGATGCCCAATGAAGGAGAAAAAATACAATAAGAAATGTGCAGATGCTGTCATTGAATCACTTGGTCTTGATATTAGAAAGATTGAAAGGTGCATGGGAGATCCAGATGCTGATTCTGAAAATCCTGTTTTGAAAGAAGAGCAAGATGACCAAATCGGGAAGGGATCACGAGGTGATGTTACCATATTGCCTACTCTAGTTGTCAATAATCGACAGTATCGAGGAAAATTGGAGAAAGGTGCTGTTATGAAAGCTATTTGTTCTGGTTTTGAAGAAACTACTGAGCCAGCTGTTTGTTTGAGCAATGATGTTGAGACAAATGAATGCTTGGAGAATAATGGCGGTTGTTGGCAGGATAAGGCAGCTAACATCACTGCATGCAAGGATACATTCCGTGGGCGAGTATGTGAATGCCCCTTGGTGGATGGTGTGCAGTTCAAAGGAGATGGTTATACGACCTGCGAAGCTAGTGGACCTGGGCGGTGCAAGATAAACAATGGAGGTTGTTGGCATGAAGCCCGGAATGGACATGCATTTTCTGCTTGTTCGGATGATGGAGGTGTTAAATGCAAGTGTCCTGCAGGGTTTAGAGGTGATGGTGTCAAAAACTGTGAAGACATTGATGAATGCAAAGAGAAGAAAGCTTGTCAGTGCCCTGAATGTAGCTGCAAGAATACTTGGGGCAGCTATGACTGCAGTTGTAGTGGAGATCTTCTGTACATCAGGGACCATGATACCTGCATAAGTAAAACTGCTAGTCCGGAGGGAAGATCTGCCTGGGCTGCTTTTTGGGTCATTTTAATTGGCTTAGTTCTAGCTGCTGCCGGGGGATACCTTGTGTACAAATATAGAATAAGGTCATATATGGATTCTGAAATCAGAGCCATCATGGCACAGTATATGCCCTTGGACAGCCAAGCAGATGTGGTAAATCATGCCAACGATGAAAGAGCATGA 1893 0.4385 MKLRRSSLGLFLGFLLLSLTPSSMARFVVEKNSLTVTSPEKIKGTHDSAIGNFGIPQYGGSMAGNVVYPKDNHKGCKEFDEFGISFKSKPGALPTIVLLDRGSCFFALKVWNAQKAGASAVLVADDIEEKLITMDTPEEERSSAKYIENITIPSALIEKSFGEKLKSAISSGEMVNVNLDWREAVPHPDDRVEYELWTNSNDECGVKCDMLMEFVKDFKGVAQILEKGGYTQFTPHYITWYCPQAFTLSKQCKSQCINHGRYCAPDPEQDFSTGYDGKDVVVENLRQLCVFKVANETKKPWVWWDYVTDFQIRCPMKEKKYNKKCADAVIESLGLDIRKIERCMGDPDADSENPVLKEEQDDQIGKGSRGDVTILPTLVVNNRQYRGKLEKGAVMKAICSGFEETTEPAVCLSNDVETNECLENNGGCWQDKAANITACKDTFRGRVCECPLVDGVQFKGDGYTTCEASGPGRCKINNGGCWHEARNGHAFSACSDDGGVKCKCPAGFRGDGVKNCEDIDECKEKKACQCPECSCKNTWGSYDCSCSGDLLYIRDHDTCISKTASPEGRSAWAAFWVILIGLVLAAAGGYLVYKYRIRSYMDSEIRAIMAQYMPLDSQADVVNHANDERA* 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03071 630 CDD EGF_CA 518 546 - -
Rops6g03071 630 Gene3D - 24 188 - -
Rops6g03071 630 FunFam vacuolar-sorting receptor 1 411 467 - -
Rops6g03071 630 SMART egfca_6 518 560 IPR001881 GO:0005509
Rops6g03071 630 MobiDBLite consensus disorder prediction 348 367 - -
Rops6g03071 630 ProSitePatterns Calcium-binding EGF-like domain signature. 518 544 IPR018097 GO:0005509
Rops6g03071 630 PANTHER PROTEASE-ASSOCIATED DOMAIN-CONTAINING PROTEIN 5 619 - -
Rops6g03071 630 Pfam Complement Clr-like EGF-like 501 521 IPR026823 -
Rops6g03071 630 CDD PA_VSR 52 179 - -
Rops6g03071 630 Gene3D Laminin 523 561 - -
Rops6g03071 630 ProSitePatterns EGF-like domain signature 2. 502 516 IPR000742 -
Rops6g03071 630 Gene3D Laminin 411 467 - -
Rops6g03071 630 Gene3D Laminin 472 522 - -
Rops6g03071 630 MobiDBLite consensus disorder prediction 348 366 - -
Rops6g03071 630 Pfam PA domain 63 165 IPR003137 -
Rops6g03071 630 FunFam Vacuolar-sorting receptor 1 24 188 - -
Rops6g03071 630 SUPERFAMILY PA domain 35 171 IPR046450 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03071 Rops-Chr6 53871957 53877660 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03071 25 630 Miscellaneous Gene Families AT2G14740 84.488 0.0 1097
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03071 - - gmx:100803958 1234.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g03071 6 53871957 53877660 Rops6g03071 6 53871957 53877660 ECH
Rops1g02465 1 47699290 47703638 Rops6g03071 6 53871957 53877660 PCT