Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02465 ATGAAGCATTGGAGATGGTCAGTGATTTTTTTTGTAGGGTTTGTGTTGCCTCTGTCGATGGCGAGATTCGTGGTGGAGAAGAACAGCTTGATGGTGACGTCGCCTGAGAAAATCAAAGGCACTCACGACAGTGCCATCGGCAACTTCGGGATACCTCAATACGGAGGTAGCATGGCCGGGAATGTGGTGTACCCCAAAGATAACAAGAATGGTTGTAAAGAGTTTGATGAGTCCTTCAAATCACACCCTGGTGCTCTTCCCACCATCCTTTTACTCGATCGCGGAAATTGCTTCTTTGCTTTGAAGGTCTGGAATGCCCAGAAGGCTGGAGCTTCTGCTGTTCTTGTTGCAGATGATATTGAGGAACCCTTGATAACTATGGACACACCTGAAGAGGATGGATCATCTTCCAAATACATAGAGAACATAACAATACCATCTGCTCTCATTGAAAAACGTTTTGGTGAAAAATTAAAGGATGCCATAAGTGGAGGGGACATGGTCAATGTAAATCTTGATTGGAGAGAGGCTGTCCCACACCCTGATGATCGTGTGGAGTATGAGTTGTGGACCAACAGCAATGATGAGTGTGGACTTAAATGTGATATGTTGATGGAATTTTTGAAGGATTTCAAGGGTGCAGCACAGATACTAGAGAAAGGCGGCTACACTCAGTTTAGACCCCATTATATAACTTGGTACTGTCCTCATGCATTCACATTGAGCAAACAGTGCAAGTCCCAATGCATAAATCATGGAAGGTATTGCGCTCCGGATCCTGAGCAGGACTTCAGCACAGGTTATGATGGGAAAGATGTCGTCATCGAAAATTTAAGGCAGCTATGTGTTTTCAAGGTGGCAAGTGAAGCCAAAAAGCCTTGGGTGTGGTGGGACTATGTCACTGATTTTCAAATCAGATGCCCAATGAAGGAGAAAAAATACAATAAGGAATGTGCAAATACTGTCATAAAATCACTGGGTCTTGATGTCGAAAAGATTGATAAGTGCATGGGAGATCCAGATGCTGATGCTGATAATCCCATTTTGAAAGAAGAGCAAGATGCCCAAATTGGGAAGGGATCGCGAGGTGATGTTACCATATTGCCTACACTTGTTGTCAATAATAGACAATATCGAGGAAAATTGGAGAAAGGTGCTGTTCTAAAGGCCATTTGTTCTGGGTTTGAGGAAACTACTGAACCAGCTGTTTGTTTAAGCAGTGATATGGAGACAAATGAGTGCTTAATGAACAATGGTGGTTGTTGGCAGGATAAAACAGCTAACGTCACTGCATGCAAGGATACATTCCGTGGACGAGTATGTGAATGCCCCCTGGTTGATGGTGTGCAGTTCAAAGGAGATGGCTACATGACTTGTGAAGTCGGTGGAGCTGGGCGTTGCAAGATTAACAATGGAGGCTGTTGGCATGATGCTCGGAATGGACATGCATTTTCTGCTTGTTTGGATAATGGAGGGGTGAAATGCCAGTGTCCTACAGGGTTTAGAGGTGATGGTGTCAAAAATTGTGAAGACATTGATGAATGCAAAGAGAAGAAAGCTTGTCAGTGCCCCCAATGTAGCTGCAAGAATACTTGGGGAAGCTATGATTGCAGTTGTAGTGGAGATCTTCTGTATATTAAGGAACATGATACCTGCATAAGTAAAAGTGCCAGTCAGGGAAGATCTACTTGGGCTGCTTTTTGGGTCATTTTAATTGGCATAGTTATGATTGCTGGTGGGGCATACCTTGTGTACAAATATAGAATAAGGCAATACATGGATTCTGAAATAAGAGCAATCATGGCACAATATATGCCCTTGGACAGCCAAGCAGAAGTTCCCAATCACGTCAATGATCAAAGAGCATGA 1869 0.435 MKHWRWSVIFFVGFVLPLSMARFVVEKNSLMVTSPEKIKGTHDSAIGNFGIPQYGGSMAGNVVYPKDNKNGCKEFDESFKSHPGALPTILLLDRGNCFFALKVWNAQKAGASAVLVADDIEEPLITMDTPEEDGSSSKYIENITIPSALIEKRFGEKLKDAISGGDMVNVNLDWREAVPHPDDRVEYELWTNSNDECGLKCDMLMEFLKDFKGAAQILEKGGYTQFRPHYITWYCPHAFTLSKQCKSQCINHGRYCAPDPEQDFSTGYDGKDVVIENLRQLCVFKVASEAKKPWVWWDYVTDFQIRCPMKEKKYNKECANTVIKSLGLDVEKIDKCMGDPDADADNPILKEEQDAQIGKGSRGDVTILPTLVVNNRQYRGKLEKGAVLKAICSGFEETTEPAVCLSSDMETNECLMNNGGCWQDKTANVTACKDTFRGRVCECPLVDGVQFKGDGYMTCEVGGAGRCKINNGGCWHDARNGHAFSACLDNGGVKCQCPTGFRGDGVKNCEDIDECKEKKACQCPQCSCKNTWGSYDCSCSGDLLYIKEHDTCISKSASQGRSTWAAFWVILIGIVMIAGGAYLVYKYRIRQYMDSEIRAIMAQYMPLDSQAEVPNHVNDQRA* 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02465 622 Gene3D Laminin 404 460 - -
Rops1g02465 622 Gene3D - 20 181 - -
Rops1g02465 622 Gene3D Glutaredoxin 231 394 - -
Rops1g02465 622 PANTHER PROTEASE-ASSOCIATED DOMAIN-CONTAINING PROTEIN 11 611 - -
Rops1g02465 622 FunFam Vacuolar-sorting receptor 1 20 181 - -
Rops1g02465 622 Pfam Complement Clr-like EGF-like 494 514 IPR026823 -
Rops1g02465 622 FunFam vacuolar-sorting receptor 1 404 460 - -
Rops1g02465 622 CDD PA_VSR 48 172 - -
Rops1g02465 622 SMART egfca_6 511 553 IPR001881 GO:0005509
Rops1g02465 622 Pfam PA domain 59 158 IPR003137 -
Rops1g02465 622 ProSitePatterns EGF-like domain signature 2. 495 509 IPR000742 -
Rops1g02465 622 CDD EGF_CA 511 539 - -
Rops1g02465 622 ProSitePatterns Calcium-binding EGF-like domain signature. 511 537 IPR018097 GO:0005509
Rops1g02465 622 Gene3D Laminin 516 552 - -
Rops1g02465 622 Gene3D Laminin 465 515 - -
Rops1g02465 622 SUPERFAMILY PA domain 88 168 IPR046450 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02465 Rops-Chr1 47699290 47703638 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02465 21 622 Miscellaneous Gene Families AT2G14740 83.802 0.0 1093
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02465 - - gmx:100820115 1210.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g02465 1 47699290 47703638 Rops1g02465 1 47699290 47703638 ECH
Rops1g02465 1 47699290 47703638 Rops6g03071 6 53871957 53877660 PCT