Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02777 ATGGGGAATTCGTTTGGATGCTCTGCCTCCGGCGAGAGGCTGGTATCGGCGGCGAGGGACGGTGACTTGGTGGAAGCGAAGATGCTTCTTAACTGCAACCCTTGTCTTGCAAAGTACTCCACTTTTGGTGGACTCAATTCCCCTCTTCATTTTGCAGCTGCAAAGGGCCATAACGAGATTGTGGCATTGTTGCTTGAGAATGGAGCTGATGTGAATTCAAAAAATTATTCTGGGCAGACGGCCTTGATGCAAGCTTGTAGATATGGGCATTGGCAAGTTGTACAGACACTTTTACTCTTCAGATGCAATGTTATGAGAGCAGATTATCTCAGTGGGAGGACAGCTCTTCACTTTGCAGCTCTGAATGGGCATGTAAGATGTATTAGACTTGTTGTGGCTGACTTTGTTCCAAGTGCTCCTTTTGAAGCTATACATGCTCGGGTAGATGCCGACAAGGGTGGTGGATCAAATGTGAAAACCAAGCATGAACAAAGTGCCCTGTCCAAGTTCATCAATAAGCCAGCTGATGGTGGTATCACTGCCCTTCATATGGCTGCGTTATATGGGTACTTTGATTGTGTACAACTGCTGCTTGATCTTAATGCAAATTTGTCTGCTGTAACATTTCATTATGGAACATCAATGGATTTAATAGGGGCTGGAAGCACTCCATTGCACTATGCTGCTTGCGGGGGCAATTTAAAATGCTGTCAGATCCTCCTTGCAAGAGGTGCAAGTCGGATGGCTTTGAATTGCAATGGGTGGCTTCCTCTTGATATTGCCAGGATGTGGGGGCGCCATTGGCTTGAACCATTGCTTGCACCCAGTTCTGATGCCATAATGCCTACCTTTCCTCATTCAAATTACTTGTCCTTGCCTCTCATGAGTGTCCTCAACATAGCCAGAGAGTATGGATTACAATCATCTACAACCTCCTCCGATGATATCGACTTCTGTGCTGTATGCCTGGAGAGGCCATGTTCAGTGGCTGCGGAAGGATGTGGGCATGAGCTTTGTGTAAGATGTGCACTCTATCTTTGTTCAACAAACAACATTTCTTCTGAAACGATTGGCCGTCCCGGCTCTATCCCTTGCCCCCTTTGTAGACATGGAATTGTCTCTTTTGTTAAGTTACCAGGATCCCAAACAAAAGAAAATAAAATACACATGTCTCTTGGCCTGTGTACCCCTTGCATGCTACATCCACGTGATGTTGATCAGCCATCTCTTTCTCATACACCAGAGATTCAAAGAAATTGTGTAGCTTCTGTTCCTTCAGAGATACTCTGCCCGGTCACTTGTAGTCCATTTCCATCTATGGCAATTCCTCTATGTACCTGCAATGATGGTTCATGTCCATCATTTGAACCCCGAGAAGTAGAAACACAAGATGAATCACCTCATCACTCACAAGCATCTACAATGGATCAGGATAAAACTGAAGGGCCAAGACTGGATAAAACAACCTGCTCAGGCATGTTTTGGGGTAGAAGAAGTTGCAGCAGGGAGCACCAATGCAATTCAGAAATAAATGCTTGA 1539 0.4535 MGNSFGCSASGERLVSAARDGDLVEAKMLLNCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSKNYSGQTALMQACRYGHWQVVQTLLLFRCNVMRADYLSGRTALHFAALNGHVRCIRLVVADFVPSAPFEAIHARVDADKGGGSNVKTKHEQSALSKFINKPADGGITALHMAALYGYFDCVQLLLDLNANLSAVTFHYGTSMDLIGAGSTPLHYAACGGNLKCCQILLARGASRMALNCNGWLPLDIARMWGRHWLEPLLAPSSDAIMPTFPHSNYLSLPLMSVLNIAREYGLQSSTTSSDDIDFCAVCLERPCSVAAEGCGHELCVRCALYLCSTNNISSETIGRPGSIPCPLCRHGIVSFVKLPGSQTKENKIHMSLGLCTPCMLHPRDVDQPSLSHTPEIQRNCVASVPSEILCPVTCSPFPSMAIPLCTCNDGSCPSFEPREVETQDESPHHSQASTMDQDKTEGPRLDKTTCSGMFWGRRSCSREHQCNSEINA* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02777 512 SMART ANK_2a 77 106 IPR002110 GO:0005515
Rops6g02777 512 SMART ANK_2a 220 249 IPR002110 GO:0005515
Rops6g02777 512 SMART ANK_2a 111 142 IPR002110 GO:0005515
Rops6g02777 512 SMART ANK_2a 44 73 IPR002110 GO:0005515
Rops6g02777 512 SMART ANK_2a 177 206 IPR002110 GO:0005515
Rops6g02777 512 ProSiteProfiles Ankyrin repeat profile. 111 132 IPR002110 GO:0005515
Rops6g02777 512 ProSiteProfiles Ankyrin repeat region circular profile. 177 206 - -
Rops6g02777 512 Pfam Ankyrin repeats (many copies) 220 261 IPR002110 GO:0005515
Rops6g02777 512 Pfam Ankyrin repeats (many copies) 174 217 IPR002110 GO:0005515
Rops6g02777 512 SUPERFAMILY Ankyrin repeat 14 273 IPR036770 -
Rops6g02777 512 ProSiteProfiles Ankyrin repeat profile. 220 252 IPR002110 GO:0005515
Rops6g02777 512 ProSiteProfiles Ankyrin repeat profile. 44 76 IPR002110 GO:0005515
Rops6g02777 512 SUPERFAMILY RING/U-box 315 375 - -
Rops6g02777 512 ProSiteProfiles Ankyrin repeat region circular profile. 111 132 - -
Rops6g02777 512 PANTHER ANKYRIN DOMAIN-CONTAINING 15 130 - -
Rops6g02777 512 ProSitePatterns Zinc finger RING-type signature. 334 343 IPR017907 -
Rops6g02777 512 Pfam Ankyrin repeats (many copies) 46 98 IPR002110 GO:0005515
Rops6g02777 512 ProSiteProfiles Ankyrin repeat region circular profile. 44 75 - -
Rops6g02777 512 Gene3D - 7 139 IPR036770 -
Rops6g02777 512 Pfam Ankyrin repeat 112 130 IPR002110 GO:0005515
Rops6g02777 512 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 302 390 IPR013083 -
Rops6g02777 512 MobiDBLite consensus disorder prediction 458 485 - -
Rops6g02777 512 SMART ring_2 319 368 IPR001841 -
Rops6g02777 512 ProSiteProfiles Zinc finger RING-type profile. 319 369 IPR001841 -
Rops6g02777 512 ProSiteProfiles Ankyrin repeat region circular profile. 220 246 - -
Rops6g02777 512 FunFam E3 ubiquitin-protein ligase XBAT33 6 140 - -
Rops6g02777 512 ProSiteProfiles Ankyrin repeat profile. 177 209 IPR002110 GO:0005515
Rops6g02777 512 Gene3D - 150 269 IPR036770 -
Rops6g02777 512 MobiDBLite consensus disorder prediction 456 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02777 Rops-Chr6 49874249 49879390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02777 10 286 Miscellaneous Gene Families AT1G07710 28.772 6.46e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02777 K19044 - gmx:100785638 978.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g02777 6 49874249 49879390 Rops6g02777 6 49874249 49879390 ECH
Rops5g00846 5 16244071 16250403 Rops6g02777 6 49874249 49879390 PCT