Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00846 ATGGGAAATTCATTTGGATGTTCGGCTTCCGGTGAGAGATTGGTGTCGGCGGCGAGGGATGGTGATTTGGTTGAAGCGAAGATGCTTTTGGAATTCAACCCCTGTCTTGCAAAGTACTCAACTTTTGGTGGTCTCAATTCACCTCTTCATTTTGCAGCTTCTAAGGGTCATAACGAGATTGTGGCGTTATTGCTTGAGAATGGAGCTGATGTGAATTCTAGAAATTATTGCGGGCAGACGGCTTTGATGCAAGCTTGTAGATATGGTCATTGGGAAGCTGTACAGACCCTTCTGCTCTTCAGATGCAATGTTATGAAAGCAGATTATCTCAGTGCGAGGACAGCTCTTCACTTTGCAGCTGTCAATGGGCATGTAAGATGCATTAGACTGGTTGTGGCTGACTTTGTTCCTAGTGCTCCTTACGAAGCTTTACATGCTCGCACGGATGCTGACATGGGTGATGGATCAAATGTAAGAAGCAAACATGAACAAAGTGCCCTGTCCAAGTTTGTAAACAAAACAGCTGATGCTGGTATTACTGCCCTTCATATGGCTGCATTAAATGGGTATTTTGATTGCGTACAACTGCTACTTGATCTTAATGCAAATGTATCAGCTGCAACATATCATTATGGAACATCAATGGATTTAATAGGGGCTGGAAGCACTCCTTTGCATTACGCTGCATGTGGGGGAAATTTAAAATGCTGTCAGATCCTCCTTGCAAGAGGTGCAAGTCGGATGGCTTTGAATTGCAATGGATGGGTTCCACTTGATGTTGCTAGGATGTGGGGGCGTCATTGGCTTGAACCATTGTTGTCACCCAGTTCTGATGCCATCATACCATCATTCCCTTCTTCAAATTATTTGTCCTTGCCTCTCATGAGTGTGCTCAACATAGCCAGAGAGTGTGGATTGCAATCATCTACAACCTCCTCTAATGAGATTGACTTTTGTGCTGTCTGCCTGGAGAGGCCATGTTCAGTGGCTGCAGAAGGATGTGGACATGAGCTTTGTGTAAGATGTGCACTCTATCTTTGCTCAACAAGCAGTGTTTCTTCTGAAATGCTTGGCCCTCCTGGCTCTATCCCTTGCCCCCTTTGTAGACATGGAGTTGTTTCTTTTGTCAAGTTACCAGGTTCCCAAGCAAAAGAAAACAAATTACATGTGTCTCTCAGCCTGTGTACCCCATGCATTCAACATCCACGCGACCAAGATCAACGATCTCTTTCTCATACACCAGAGATTCGAAGAAACCGTGTAGCTTCTGTTCCTTCAGAGATGCTTTGCCCTGTCACTTGTACACCATTTCCATCTGTAGCTATTCCTCTATGTACCTGCAATGATGGTCCTTGTCCATCATTTGAATCCCGTGAAGTTGAAACACAAGATGAATCGCCTCGCCACTCTCAAGCTTCCACAACGGATCAGGATAAAATGGAAGGGCCAAGACTAGAGAAGACAACATGTTCAAGCATGTTTTGGGGTAGAAGAAGTTGCAGCAGGGAGCATCAATGCAATTCAGAAATAAATGCTTGA 1539 0.4464 MGNSFGCSASGERLVSAARDGDLVEAKMLLEFNPCLAKYSTFGGLNSPLHFAASKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEAVQTLLLFRCNVMKADYLSARTALHFAAVNGHVRCIRLVVADFVPSAPYEALHARTDADMGDGSNVRSKHEQSALSKFVNKTADAGITALHMAALNGYFDCVQLLLDLNANVSAATYHYGTSMDLIGAGSTPLHYAACGGNLKCCQILLARGASRMALNCNGWVPLDVARMWGRHWLEPLLSPSSDAIIPSFPSSNYLSLPLMSVLNIARECGLQSSTTSSNEIDFCAVCLERPCSVAAEGCGHELCVRCALYLCSTSSVSSEMLGPPGSIPCPLCRHGVVSFVKLPGSQAKENKLHVSLSLCTPCIQHPRDQDQRSLSHTPEIRRNRVASVPSEMLCPVTCTPFPSVAIPLCTCNDGPCPSFESREVETQDESPRHSQASTTDQDKMEGPRLEKTTCSSMFWGRRSCSREHQCNSEINA* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00846 512 MobiDBLite consensus disorder prediction 456 485 - -
Rops5g00846 512 ProSiteProfiles Ankyrin repeat profile. 44 76 IPR002110 GO:0005515
Rops5g00846 512 FunFam E3 ubiquitin-protein ligase XBAT33 6 140 - -
Rops5g00846 512 PANTHER ANKYRIN REPEAT-CONTAINING 113 262 - -
Rops5g00846 512 Gene3D - 8 145 IPR036770 -
Rops5g00846 512 ProSiteProfiles Ankyrin repeat profile. 177 209 IPR002110 GO:0005515
Rops5g00846 512 Gene3D - 146 280 IPR036770 -
Rops5g00846 512 SUPERFAMILY Ankyrin repeat 14 273 IPR036770 -
Rops5g00846 512 ProSiteProfiles Ankyrin repeat profile. 220 252 IPR002110 GO:0005515
Rops5g00846 512 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 302 390 IPR013083 -
Rops5g00846 512 ProSitePatterns Zinc finger RING-type signature. 334 343 IPR017907 -
Rops5g00846 512 SMART ANK_2a 77 106 IPR002110 GO:0005515
Rops5g00846 512 SMART ANK_2a 111 141 IPR002110 GO:0005515
Rops5g00846 512 SMART ANK_2a 177 206 IPR002110 GO:0005515
Rops5g00846 512 SMART ANK_2a 44 73 IPR002110 GO:0005515
Rops5g00846 512 SMART ANK_2a 220 249 IPR002110 GO:0005515
Rops5g00846 512 ProSiteProfiles Zinc finger RING-type profile. 319 369 IPR001841 -
Rops5g00846 512 MobiDBLite consensus disorder prediction 458 485 - -
Rops5g00846 512 Pfam Ankyrin repeats (many copies) 220 261 IPR002110 GO:0005515
Rops5g00846 512 Pfam Ankyrin repeats (many copies) 156 198 IPR002110 GO:0005515
Rops5g00846 512 Pfam Ankyrin repeats (many copies) 46 98 IPR002110 GO:0005515
Rops5g00846 512 SUPERFAMILY RING/U-box 318 375 - -
Rops5g00846 512 ProSiteProfiles Ankyrin repeat region circular profile. 220 246 - -
Rops5g00846 512 ProSiteProfiles Ankyrin repeat region circular profile. 44 75 - -
Rops5g00846 512 ProSiteProfiles Ankyrin repeat region circular profile. 177 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00846 Rops-Chr5 16244071 16250403 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00846 17 279 Miscellaneous Gene Families AT2G31820 29.749 2.11e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00846 K19044 - gmx:100812809 966.452
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g00846 5 16244071 16250403 Rops5g00846 5 16244071 16250403 ECH
Rops5g00846 5 16244071 16250403 Rops6g02777 6 49874249 49879390 PCT