Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02638 ATGGCTTTCGAAAGGCAACAAGCATCGATGCTTATTCTCTTGTCCCTCTTGACATTGTCCTTCTTCACCATCAAATCTGCACAGGCGTCGTGCAAAGGTGAGGTGGCCATCTACTGGGGTCAGAACGGTAACGAAGGCAACTTGACCTCCACATGCGACACTGGAAACTTTGACATTGTGCTGCTGGCTCACCTCCATGTCTTTGGTTGTAACAAAACCCCACAGTTTGAATTCTCAGGCCATTGTGGTGACTCCTGGAACCCTTGTACCAAACTGCAATCCGAAATACAACACTGCCAGGAAAAAGGTGTCAAAGTTTTCCTTTCCCTCGGAAGTGAAAGACAAAGCTCCTTCTGCTCTGCCGAGGATGCAATAGAGTTTGCCCATTACCTCTATGAAAACTTCCTCAGTGGTCAATCAGGTCCACTGGGGAAGGTAACATTGGACGGCATTGATTTTCACATTGAAGGTGGTGGTGCATCAAAACTTTATTGGGATGACCTCGCCAAAGAACTCAACACTCTCAGACAGCAAAATAATTACTTTTACCTCTCTGCGGCCCCACAATGCAAGTACCCAGATGAACTCCTTGACAAAGCTATCAAAACTAACGTTTTCAATTATATATTTGTTAAGTTCTACAACAACAATCTATGTCAATACACAGCAGGTGGTGGTACTATCAATATGCTTTTTAAGGCATGGAAAGATTGGACCTCGTCAGTTCTACCAAATAACACGGTATTATTGGGAGCACCAGCATCGCCTGAAGCAGCTCTAGGTGGTGGTTTTATACCATCAGAAGAGCTGATTGCTGATGTACTTCCCGAGATAAAAGAAGCTTCCAACTATGGAGGAGTCATGCTGTGGACCAGATACTATGACGTTCAAACCGATCCTACTTACAGCGATCAGATAGTGGACCACATTCCAAGTGGAGGAGTTTCACTCAAGGCTGTGAAAGGAAGAATTGCCGACGAAATATCCCAGTGTGTGTTGGCAGCTTTGAACCGCTTCGAACCCAAATCATCCTCCTCATATTAG 1044 0.4502 MAFERQQASMLILLSLLTLSFFTIKSAQASCKGEVAIYWGQNGNEGNLTSTCDTGNFDIVLLAHLHVFGCNKTPQFEFSGHCGDSWNPCTKLQSEIQHCQEKGVKVFLSLGSERQSSFCSAEDAIEFAHYLYENFLSGQSGPLGKVTLDGIDFHIEGGGASKLYWDDLAKELNTLRQQNNYFYLSAAPQCKYPDELLDKAIKTNVFNYIFVKFYNNNLCQYTAGGGTINMLFKAWKDWTSSVLPNNTVLLGAPASPEAALGGGFIPSEELIADVLPEIKEASNYGGVMLWTRYYDVQTDPTYSDQIVDHIPSGGVSLKAVKGRIADEISQCVLAALNRFEPKSSSSY* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02638 347 SUPERFAMILY (Trans)glycosidases 31 300 IPR017853 -
Rops6g02638 347 Pfam Glycosyl hydrolases family 18 35 295 IPR001223 GO:0005975
Rops6g02638 347 FunFam Acidic endochitinase SE2 33 310 - -
Rops6g02638 347 CDD GH18_hevamine_XipI_class_III 33 308 IPR045321 -
Rops6g02638 347 PANTHER ENDOCHITINASE 18 306 - -
Rops6g02638 347 Gene3D Glycosidases 33 307 - -
Rops6g02638 347 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 33 313 IPR001223 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02638 Rops-Chr6 47371084 47372127 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02638 12 310 Glycoside Hydrolase AT5G24090 43.377 1.93e-81 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02638 K01183 - gmx:547449 375.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g02638 6 47371084 47372127 Rops6g02638 6 47371084 47372127 ECH
Rops5g01010 5 20323921 20324937 Rops6g02638 6 47371084 47372127 PCT