Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01010 ATGGCTATCACAAAACAACCATCTATATTCCTCCTCTTTGCCCTCATAACCCTCTCTTCCATAATCAACTCATCCAACGCTGCTGATTGTGTTGGTAACGGAGCCATTTCTGTGTACTGGGGTCAAGGAACCGATAGCACAGTTGAGGGCACCTTGCAAGATGCATGTGCCACTGGAAATTACAATATCGTGATCATTCAAGGCCTTATTGTGTACGACAATGGCAGCACCCCAACATTAAACTTGGAGAACCATTGTGGCACCAGTGGGAACCCTTGCTCAAACCTACAGTCAGAAATAGAATACTGCCAAGGAAAAAACATCAAAGTTTTCCTTTCTATTATTTTGGATTTGCCAACTGGAGGTTCTGGATCATCCTCAGAGAATGTGACAAACGACCTTGCAGACTATCTCTTGAAGAACTACCTCAGTGGTCAATCTGGTCCACTAGGAAGTGTATCCTTGGATGGCATTGATATTATGGATGTAACAGATAGTTCAAACCTTAAATGGGATGAACTTGTTAAGGTCATCCATGCATCCACAACAGAAAGAAAAATTTACCTATCAGCATCTCCACAATGTGTATACCCAGATTACTACTTAGGCGACGTAATCAGCACTGGCCTTTTAGATTATGTCTGGGTTGAGTTCTTCTACAATAACCCTTCTTGCATATACTCAAATGGAGATGCTACCAATCTTTTGAAAGCATTGAAAACATGGACCTCAAGTGTTCCCAAAAGCACAATATTCCTGGGTCTTACTGCTACTGAGGAAATAGCTGGTTATATATCACCAGATGCTCTCAAATCTGATGTTCTACCAACCGCAAAGGAAGCTTCAAACTATGGTGGAGTTATGATTTGGAACAGGTATTATGATGCAGTTAACAACTACACTGCTCAGATCAAAGACAGCGTCGGAAAAGTTTGTCGATGTGTGTGTGATGATACTGCATCGACCAGTTTCTATGGTCTGCGTCCTGGATCTATGCGTCTAGTGGGATCCCACTGA 1017 0.4228 MAITKQPSIFLLFALITLSSIINSSNAADCVGNGAISVYWGQGTDSTVEGTLQDACATGNYNIVIIQGLIVYDNGSTPTLNLENHCGTSGNPCSNLQSEIEYCQGKNIKVFLSIILDLPTGGSGSSSENVTNDLADYLLKNYLSGQSGPLGSVSLDGIDIMDVTDSSNLKWDELVKVIHASTTERKIYLSASPQCVYPDYYLGDVISTGLLDYVWVEFFYNNPSCIYSNGDATNLLKALKTWTSSVPKSTIFLGLTATEEIAGYISPDALKSDVLPTAKEASNYGGVMIWNRYYDAVNNYTAQIKDSVGKVCRCVCDDTASTSFYGLRPGSMRLVGSH* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01010 338 CDD GH18_hevamine_XipI_class_III 34 306 IPR045321 -
Rops5g01010 338 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 34 311 IPR001223 GO:0005975
Rops5g01010 338 Gene3D Glycosidases 34 306 - -
Rops5g01010 338 PANTHER ENDOCHITINASE 13 305 - -
Rops5g01010 338 Pfam Glycosyl hydrolases family 18 37 295 IPR001223 GO:0005975
Rops5g01010 338 SUPERFAMILY (Trans)glycosidases 31 305 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01010 Rops-Chr5 20323921 20324937 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01010 1 308 Glycoside Hydrolase AT5G24090 40.823 1.66e-74 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01010 K01183 - pda:120103931 262.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g01010 5 20323921 20324937 Rops6g02638 6 47371084 47372127 PCT