Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02582 ATGGATACTAAGGGGAGATTGGTTGCAGGGTCACACAACAGGAATGAGTTTGTTCTTATCAATGCTGATGAGACTGCAAGAGTGAACGCTGTTACAGAATTAAGTGGGCAAATTTGCCAGATCTGTGGGGATGAGATAGAGGTTACAGTGGATGGGGAACCATTTGTTGCTTGCAATGAATGTGCATTCCCAGTGTGCAGACCTTGCTACGAGTATGAAAGAAGAGAGGGGAACCAAGCTTGTCCTCAGTGCAAAACCAAATACAAACGCATAAAGGGTAGTCCTAGAGTTGAGGGTGATGAAGAAGAGGATGATATTGATGATTTGGAAAATGAGTTTGATATTGGAAGCAATATCAGGCGTGACCCTCATCACATTGCTGAGGCCATGCTCTCTGCTCACCTAAACACTGGCCGTAGTTCACAAATGAATGCTTCAGGAATCACCACGCCATCAGAGTTAGATGCAGTTTCCGTGGCTCCTGATATTCCTCTCCTGACATATGATCATGAGGATGTTGGAATTTCTGCTGATAAACATGCTCTCATTATTCCTCCATTCATGCCTCGTGGGAAACGGGTTCATCCTATGCCTATTCCTGATTCATCTGTGCCGGTTCAACCCAGACCTATGGATCCTAAAAAAGATTTAGCAGTTTATGGATATGGAAGTGTTGCATGGAAGGAAAGAATGGAGGAGTGGAAGAAAAAGCAGAATGAAAAATTTGAGGTGGCTAAGCACGAAAGGGGTAACGATGGTGGGAAAAATGGTGATGAGCTTGACGACCCTGATTTGCCAAAAATGGATGAAGGGAGGCAACCACTGTGGAGGAAGTTGCCAATTAGTCCAAGCAAGATAAATCCATATCGAATTATAATAGTAATCCGGATTGCTATTCTTGGCCTCTTTTTTCATTACAGAATTCTCCATCCAGTCAATAATGCATATGCATTGTGGCTGACATCAGTAATATGTGAAATCTGGTTTGCTGTGTCATGGATTTTGGATCAGTTTCCAAAATGGTGCCCAATTGAGCGAGAAACTTACCTTGATCGTTTGTCACTGAGGTATGAGAAAGAAGGAAAGCCATCTGAATTAGCTGATGTAGACATATTTGTTAGTACAGTAGATCCTATGAAAGAGCCTCCACTTATAACTGCAAACACAGTTCTGTCAATCCTAGCTGTAGATTATCCAGTGGACAAAGTGGCATGCTATGTCTCAGATGATGGTGCAGCTATGCTTACATTTGAAGCCCTTTCAGAGACATCTGAGTTTGCAAGAAAATGGGTTCCATTCTGCAAGAAGTTCAGTATTGAACCACGGGCTCCTGAATGGTATTTTGCTCAGAAGGTTGACTATCTGAAAGACAAAGTGGATGCAACATTCATCAGAGAGCGACGTGCTATCAAGAGGGAGTATGAAGAGTTTAAAGTTCGGATCAATGCATTGGTTGCAATGGCACAGAAGGTTCCTGAAGATGGCTGGACAATGCAGGATGGGACTCCATGGCCAGGAAACAATGTCAGAGATCATCCTGGAATGATTCAGGTTTTCCTTGGTCAAAATGGTGTTCGTGATATTGAAGGGAATGAGTTACCTCGTCTTGTATATGTGTCTCGTGAGAAAAGACCTGGATTTGAACACCACAAAAAAGCTGGAGCTATGAATGCCTTGATTCGAGTCTCAGCAGTCATATCAAATGCTCCTTACCTACTGAATGTTGATTGTGATCACTACATAAACAACAGTAAGGCACTTCGTGAAGCCATGTGTTTCATGATGGATCCTACATCAGGGAAAAAAATATGCTACGTACAATTTCCTCAAAGATTTGATGGGATTGATCGTCATGATAGATACTCAAACCGTAATGTTGTATTCTTTGATATCAACATGAAAGGTTTAGATGGCATCCAAGGACCAATATATGTGGGAACTGGGTGTGTCTTTAGGAGGCAGGCACTCTATGGATATGATGCCCCTGCTAAGAAGAAACCACCAAACAAGACCTGTAACTGTTGGCCCAAATGGTGTTGCCTGTGTTGTGGATCTAGGAAGAAGAATAGGAAAGTGAAATCAGGTCCGAGAAAGAAGATAAAGAATAAGGATGCTACTAAGCAAATACATGCACTAGAAAATATTGAAGAGGGAATAGAAGGAATTGACAGTGAGAAGTCATCACTAATGTCACAACAAAAATTTGAGAAAAAATTTGGGCAATCATCTGTTTTCATTGCTTCAACGCTTATGGAAGATGGGGGCATTTTTAAGACAGCAACTTCTGCATCACTCTTGAAAGAAGCCATCCATGTCATCAGTTGCGGTTATGAAGATAAGACAGAGTGGGGGAAAGAGGTTGGATGGATATATGGCTCTGTTACAGAGGATATTTTAACAGGTTTCAAGATGCACTGTCATGGTTGGCGATCTGTGTATTGCATGCCTAAAAGGCCTGCTTTTAAGGGTTCAGCTCCTATAAATCTCTCTGATCGTCTGCATCAAGTTCTTCGTTGGGCACTTGGATCTGTTGAGATCCTATTGAGTAGGCATTGCCCTATATGGTATGGATATGGTTGTGGCTTGAAATGGCTGGAACGTTTTTCTTACATAAACTCGGTGGTTTATCCTTTGACATCAATTCCCTTAATAGCCTATTGCACCTTGCCAGCTGTATGTCTTCTCACTGGGAAGTTCATAGTCCCTGAGATTAGCAACTATGCTAGTATCATTTTCATGGCACTCTTCATATTTATAGCTGCAACTAGCATCTTGGAAATGCAGTGGGGAGGTGTTGGCATACATGACTGGTGGAGGAATGAACAGTTCTGGGTCATTGGTGGTGCCTCCTCACACCTCTTTGCTCTCTTTCAAGGTTTGCTTAAGGTTCTGGCAGGAGTTAACACAAACTTCACTGTCACATCCAAAGCTGCAGATGACGGACAATTTGCTGAACTCTACATCTTCAAGTGGACATCATTGTTGATCCCTCCTTTGACCTTACTTATCATAAACATAATTGGAGTTATTGTTGGTGTTTCAGATGCAATAAACAACGGCTATGATTCATGGGGTCCTTTGTTTGGTAAGCTATTTTTTGCCCTATGGGTCATTGTCCATCTTTACCCATTCCTCAAGGGAGTTATGGGAAAACAGGAAGGTGTTCCTACCATCATTTTGGTCTGGGCAATTCTGCTGGCTTCAATTTTCTCACTTTTATGGGTGCGGATCAACCCGTTTTTGGCAAAAGATGGCATTGTATTGGAACTTTGCGGTTTGAATTGTGACTAG 3291 0.4215 MDTKGRLVAGSHNRNEFVLINADETARVNAVTELSGQICQICGDEIEVTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTKYKRIKGSPRVEGDEEEDDIDDLENEFDIGSNIRRDPHHIAEAMLSAHLNTGRSSQMNASGITTPSELDAVSVAPDIPLLTYDHEDVGISADKHALIIPPFMPRGKRVHPMPIPDSSVPVQPRPMDPKKDLAVYGYGSVAWKERMEEWKKKQNEKFEVAKHERGNDGGKNGDELDDPDLPKMDEGRQPLWRKLPISPSKINPYRIIIVIRIAILGLFFHYRILHPVNNAYALWLTSVICEIWFAVSWILDQFPKWCPIERETYLDRLSLRYEKEGKPSELADVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFSIEPRAPEWYFAQKVDYLKDKVDATFIRERRAIKREYEEFKVRINALVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVRDIEGNELPRLVYVSREKRPGFEHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPAKKKPPNKTCNCWPKWCCLCCGSRKKNRKVKSGPRKKIKNKDATKQIHALENIEEGIEGIDSEKSSLMSQQKFEKKFGQSSVFIASTLMEDGGIFKTATSASLLKEAIHVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCMPKRPAFKGSAPINLSDRLHQVLRWALGSVEILLSRHCPIWYGYGCGLKWLERFSYINSVVYPLTSIPLIAYCTLPAVCLLTGKFIVPEISNYASIIFMALFIFIAATSILEMQWGGVGIHDWWRNEQFWVIGGASSHLFALFQGLLKVLAGVNTNFTVTSKAADDGQFAELYIFKWTSLLIPPLTLLIINIIGVIVGVSDAINNGYDSWGPLFGKLFFALWVIVHLYPFLKGVMGKQEGVPTIILVWAILLASIFSLLWVRINPFLAKDGIVLELCGLNCD* 1097
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02582 1096 FunFam Cellulose synthase 21 112 - -
Rops6g02582 1096 MobiDBLite consensus disorder prediction 243 267 - -
Rops6g02582 1096 Pfam Cellulose synthase 369 1084 IPR005150 GO:0016020|GO:0016760|GO:0030244
Rops6g02582 1096 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 112 IPR013083 -
Rops6g02582 1096 FunFam Cellulose synthase 486 660 - -
Rops6g02582 1096 CDD mRING-HC-C4C4_CesA 37 87 - -
Rops6g02582 1096 SUPERFAMILY RING/U-box 27 107 - -
Rops6g02582 1096 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Rops6g02582 1096 SUPERFAMILY Nucleotide-diphospho-sugar transferases 382 905 IPR029044 -
Rops6g02582 1096 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 273 1061 - -
Rops6g02582 1096 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 515 663 IPR029044 -
Rops6g02582 1096 Pfam Zinc-binding RING-finger 31 105 IPR027934 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02582 Rops-Chr6 46481594 46487828 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02582 1 1095 Glycosyltransferase AT2G21770 78.727 0.0 1779
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02582 K10999 - gmx:100806786 1986.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g01100 5 22621046 22628027 Rops6g02582 6 46481594 46487828 PCT