Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02188 ATGGATAGAGTAAAGGATTTGGCATCAAAGAGTGCTGCTGTTATATTTACCAAAAGTTCATGTTACATGTGCCACAGCATCACACAACTTTTCTATGAGCTTGGAGCAAGCCCTGCAGTGCATGAGCTTGATAATGATGCTTATGGTAAGGAAATGGAAAGGGCTTTAAGGAGTCTGGGCTGTAACCCTTCAGTCCCAGCGGTTTTCATTGGAGGAAAATTTATAGGGTCATCAAAAGATGTGATATCCCTCCATGTTGATGGCTCTCTGAAACAAATGCTCATGGCTGCTAAGGCCATCTGGTTTTAG 309 0.4272 MDRVKDLASKSAAVIFTKSSCYMCHSITQLFYELGASPAVHELDNDAYGKEMERALRSLGCNPSVPAVFIGGKFIGSSKDVISLHVDGSLKQMLMAAKAIWF* 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02188 102 SUPERFAMILY Thioredoxin-like 1 101 IPR036249 -
Rops6g02188 102 Gene3D Glutaredoxin 1 101 - -
Rops6g02188 102 CDD GRX_GRXh_1_2_like 12 93 - -
Rops6g02188 102 ProSiteProfiles Glutaredoxin domain profile. 1 101 - -
Rops6g02188 102 PANTHER GLUTAREDOXIN 1 101 IPR011905 -
Rops6g02188 102 PRINTS Glutaredoxin signature 13 31 IPR014025 -
Rops6g02188 102 PRINTS Glutaredoxin signature 72 85 IPR014025 -
Rops6g02188 102 PRINTS Glutaredoxin signature 58 71 IPR014025 -
Rops6g02188 102 NCBIfam glutaredoxin-like family 4 101 IPR011905 -
Rops6g02188 102 Pfam Glutaredoxin 14 75 IPR002109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02188 Rops-Chr6 40321281 40321921 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02188 1 102 Miscellaneous Gene Families AT4G15700 47.059 8.88e-34 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02188 K03676 - gmx:100305876 194.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g02188 6 40321281 40321921 Rops6g02188 6 40321281 40321921 ECH
Rops8g03638 8 76560955 76565044 Rops6g02188 6 40321281 40321921 PCT