Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02066 ATGAATTACGGCCGTCTGATTTCCGGCGGAGTAAGGCTGATCCGGAGGCTATGCACGGCGGCCACGGAGACTGACCTTCCGGCGAAGAAGCTAAACCTTTATCGAAGGTTGTCGGCGCTGGAAATGACCGGAGGGAGCGTGTCGCAGACGTTGAACGAGTATGTAATGGAGGGAAAAGCTATAAGAAAAACGGAGCTCGAGAAATGTATCAAGGAGCTTCGAAAGTATCGTAGATTCCAGCACTCACTCGAGATAATGGAATGGATGGAGATGAGGAAAATTAACTTTTCCTGGGATAATTATGCAGTGCATTTAGATCTTGTGTCCAAAACCAAAGGGGTAGTTGCAGCTGAGAATCACTTTAACGGTCTTCCTCCTCCTGCTAAGAATAAATACACATATGGTGCTCTTTTGAACTGTTATTGCAAGGAACTCATGACAGATAAGGCATTGGCTCTTTTTGACAAGATGGATGAATTGGGTTATGTCACTAATTTGGCTTTCAACAATCTGATGAGTCTTTATATGAGGTTGGGTCAACCCCAGAAAGTGCCTCAGCTGGTGAATGATATGAAGCAGAGGAACATTCCCATGAGTGCATTCACATACCATGTCTGGATGAATAGCTGTGCTTCTTTGAATGATCTTGATGGGGTGGAGAGAGTCTATGAGCAGATGAGGAGAGAAGATGGAGACATGATTGATTGGAGGACTTATAGCAACCTAGCTGCTATCTATGTAAAGGTTAAACAATTTGAGAAAGCTGAGTTGTTGCTTAGGAAGCTGGAACAAGAGGTGAAGCCACAGCGGCGCGACGCTTACCATTGCTTACTGAGCCTTTACGCAGGGACTGGAAATCATGGAGAGGTTTATAGAGTATGGAATTCCCTTAAGTCGGTTACCCCGGTGACCAATTTGAGCTATCTTGTTATGCTTTCTAGCCTTCGAAGGCTTAATGATGTGGAGGGCATAACAAAATGCTTTAAGGAGTGGGAATCTAGCTGTCTTAGTTATGATATAAGGATGGTTAGTATTGCAGTAAGTGCATACTTGAGTCAGAACATGGAAGAAGAAGCTGTGTCGGTCTTTGAGGAGGCTATCAGGAGGAGCAAAGGACCTTTCTTTAAGATTAGGGAAATGTTCATGACGTTTTTCTTGGAGAAACGTCGACTGGATGATGCTGTGAGACACTTGGAGGTGGCACTTTCTGAAGTCATGGATGATGAATGGCGTCCTTCACCACAAGTTGTAAGTGCTTTTCTGAAGTATTATGAAGAAGAAACAGATATTGATGGTGTTGATGAGTTATGCAAGATTCTCAAGACTCACAATATTGATGATTCATGGCTTAAAACTTGCATTACCGCTTCCTAA 1374 0.4352 MNYGRLISGGVRLIRRLCTAATETDLPAKKLNLYRRLSALEMTGGSVSQTLNEYVMEGKAIRKTELEKCIKELRKYRRFQHSLEIMEWMEMRKINFSWDNYAVHLDLVSKTKGVVAAENHFNGLPPPAKNKYTYGALLNCYCKELMTDKALALFDKMDELGYVTNLAFNNLMSLYMRLGQPQKVPQLVNDMKQRNIPMSAFTYHVWMNSCASLNDLDGVERVYEQMRREDGDMIDWRTYSNLAAIYVKVKQFEKAELLLRKLEQEVKPQRRDAYHCLLSLYAGTGNHGEVYRVWNSLKSVTPVTNLSYLVMLSSLRRLNDVEGITKCFKEWESSCLSYDIRMVSIAVSAYLSQNMEEEAVSVFEEAIRRSKGPFFKIREMFMTFFLEKRRLDDAVRHLEVALSEVMDDEWRPSPQVVSAFLKYYEEETDIDGVDELCKILKTHNIDDSWLKTCITAS* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02066 457 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 130 164 IPR002885 -
Rops6g02066 457 Gene3D Tetratricopeptide repeat domain 166 300 IPR011990 GO:0005515
Rops6g02066 457 NCBIfam pentatricopeptide repeat 201 229 IPR002885 -
Rops6g02066 457 NCBIfam pentatricopeptide repeat 132 163 IPR002885 -
Rops6g02066 457 NCBIfam pentatricopeptide repeat 167 199 IPR002885 -
Rops6g02066 457 Gene3D Tetratricopeptide repeat domain 46 165 IPR011990 GO:0005515
Rops6g02066 457 Pfam PPR repeat family 167 211 IPR002885 -
Rops6g02066 457 PANTHER OS12G0527900 PROTEIN 29 451 - -
Rops6g02066 457 Pfam PPR repeat 345 369 IPR002885 -
Rops6g02066 457 Pfam PPR repeat 238 264 IPR002885 -
Rops6g02066 457 Pfam PPR repeat 132 161 IPR002885 -
Rops6g02066 457 FunFam Pentatricopeptide repeat-containing protein mitochondrial 63 272 - -
Rops6g02066 457 SUPERFAMILY TPR-like 139 403 IPR011990 GO:0005515
Rops6g02066 457 Gene3D Tetratricopeptide repeat domain 301 441 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02066 Rops-Chr6 38780795 38782595 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02066 33 441 EF-hand Containing Proteins AT1G02150 35.593 2.14e-86 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02066 - - gmx:100781679 717.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g02066 6 38780795 38782595 Rops6g02066 6 38780795 38782595 ECH
Rops6g02066 6 38780795 38782595 Rops8g03519 8 74825762 74826935 PCT