Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01865 ATGTCTCATACCCCACAAACCCTAATGCCCGTCGATTCCGACGAACCACCACCGGCGACCCAAATACCCGCTTCCCCCAACCCACCCGCCAATTCCACCCCAACCCTTCTCCACCTTTCCTTCAACCAAGACTCCGGTTGCTTCGCCGCCGGCACCGATCACGGCTTCCGCATCTACAACTGCGACCCCTTTCGCGAGATTTTCCGTCGTGAATTCGGTCCAGGCGGTGGAATCGGCTTGGTCCACATGCTATTCCGTTGCAACATACTCGCCTTTGTCGGTGGTGGGTCGGATCCTCGGTACCCGGTTAACAAGGTGATGATTTGGGATGATCACCAGTCACGGTGCATCGGAGAGCTTTCGTTTCGATCGGAGGTGAAAGGGGTTCGTCTCCGAAGGGATCGAATCGTGGTGGTTCTGGCGCATAAGATATTCGTTTACAATTTCGCGGATCTTAAGGTTATGCATCAAATTGAGACCATTGCGAACCCTAAGGGACTCTGTGAGGTGTCCCATGTTTCTGGGACCATGGTTTTGGTATGTCCTGGTTTGCAGAAGGGTCAGGTTAGGGTGGAGCATTATGCTTCCAAGAGGACCAAGTTCATCATGGCGCATGATTCCAGAATTGCATGCTTCGCTCTTACCCAAGATGGCCGTTTGCTTGCCACTTCAAGCTCCAAGGGGACCCTGGTTAGGGTTTTCAATACCTTGGATGGTTCTTTGCTCCAAGAGGTACGGAGAGGTGCTGACCGAGCAGAAATATACAGCCTTGCCTTCTCTCCTACTGCACAGTGGCTGGCTGTTTCCAGTGACAAGGGAACCGTTCATGTATTCAACCTGAAGGTTGATTCGGGACTGTTAGGGCATGAAAGATCACATACTACATCTGAGTCTGGTCCTGCTAGCCCAACAGGGGTTTCTTCTCTTTCATTCATTAAAGGTGTGTTACCCAAGTATTTTAGCTCAGAGTGGTCTGTGGCTCAATTTCGCTTGCAAGAAGGTTTGCAATATATTGTTGCCTTTGGCCATCAAAAGAATACAATCGTAATACTTGGCATGGATGGCAGCTTCTATCGATGTCAATTTGATTCTGCAACCGGTGGAGAGATGACTCAACTTGAATATTACAATTTCCTAAAGCCAGAAGAGACATTCTAG 1158 0.4974 MSHTPQTLMPVDSDEPPPATQIPASPNPPANSTPTLLHLSFNQDSGCFAAGTDHGFRIYNCDPFREIFRREFGPGGGIGLVHMLFRCNILAFVGGGSDPRYPVNKVMIWDDHQSRCIGELSFRSEVKGVRLRRDRIVVVLAHKIFVYNFADLKVMHQIETIANPKGLCEVSHVSGTMVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGRLLATSSSKGTLVRVFNTLDGSLLQEVRRGADRAEIYSLAFSPTAQWLAVSSDKGTVHVFNLKVDSGLLGHERSHTTSESGPASPTGVSSLSFIKGVLPKYFSSEWSVAQFRLQEGLQYIVAFGHQKNTIVILGMDGSFYRCQFDSATGGEMTQLEYYNFLKPEETF* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01865 385 PANTHER WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES WIPI -RELATED 32 378 - -
Rops6g01865 385 Gene3D - 31 365 IPR015943 GO:0005515
Rops6g01865 385 FunFam Autophagy-related protein 18a isoform A 34 364 - -
Rops6g01865 385 SUPERFAMILY WD40 repeat-like 34 286 IPR036322 GO:0005515
Rops6g01865 385 SMART WD40_4 26 60 IPR001680 GO:0005515
Rops6g01865 385 SMART WD40_4 238 279 IPR001680 GO:0005515
Rops6g01865 385 SMART WD40_4 195 235 IPR001680 GO:0005515
Rops6g01865 385 MobiDBLite consensus disorder prediction 1 34 - -
Rops6g01865 385 MobiDBLite consensus disorder prediction 16 30 - -
Rops6g01865 385 Pfam WD domain, G-beta repeat 248 279 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01865 Rops-Chr6 36482559 36485318 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01865 K22991 - gmx:100787427 671.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01865 6 36482559 36485318 Rops6g01865 6 36482559 36485318 ECH
Rops8g03657 8 76867570 76870398 Rops6g01865 6 36482559 36485318 ECH