Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01581 ATGTCCATGTCTCGAATAATCTTCTCGGCATGGAAGAAGAAGAAGAAGAAGCTGCACCTCAACCAACTACCCACTCTTTCTTCTTCGTATTGTTCTTCACATACCCACTTCACCCTTTCACCCCACCACCATAACCACTGGTTCAGCTTCTCCCTATTCTCAACCCACTCTAACAACAACCACCTTCAACTCCACTTCGCCGCCCAACGCCATAGCATTGCACCTCTCCAAAGCATTGGTGGTCATGGTGATGATGATGGGGATGGTGTGGCTGTGCATACTCCTCCGGGCCCACCTTTTGCACCAGGCCTTAATCTCATTCGTGCTGAGAAGACTTCTTCCTCCTGGGGAGGTTCCAATTTGGGTAAGGATTTCCCAACTCCCAAGGAAATCTGCAAGGGTCTTGACAAGTTTGTTATTGGTCAACACAGGGCCAAAAAGGTGCTTTCTGTAGCTGTTTATAATCACTATAAAAGAATATACCATGCCTCTTTACAGAAAGGGTCAGGGGAAGAATCAGGAGTTTCAGAAGGGTTGGATGATGATGATCATGTGGAGCTAGAAAAGAGTAATGTTCTGTTGATGGGTCCAACAGGTTCAGGGAAGACATTACTTGCAAAAACACTAGCTCGATTTGTGAATGTCCCATTTGTCATTGCTGATGCAACATCCCTAACACAGGCTGGTTATGTTGGAGAAGATGTTGAATCAATATTGTATAAACTTCTTGCGGCAGCAGAGTTCAATGTTCAAGCAGCTCAACAAGGGATTGTTTACATTGATGAAGTGGACAAGATAACTAAGAAGGCTGAGAGCCTAAATATTAGCCGGGATGTTTCTGGCGAGGGTGTTCAGCAGGCATTATTAAAAATGCTGGAAGGAACTATAGTAAATGTTCCTGAGAAAGGAGCAAGGAAGCACCCACGGGGTGATAACATACAGATTGACACAAAGAATATTCTTTTTATGTGTGGTGGAGCATTTGTTGATCTTGAAAAAACCATTTCAGAGAGACGACAAGATTCTTCTATTGGTTTTGGAGCACCAGTCCGTGCCAATATGAGAACTGGTGGAGTAACACATGCTTCAGTCACATCATCGTTACTTGAATCGGTGGAAAGTGCTGATCTTATTGCATATGGTCTCATACCAGAGTTTATAGGACGATTTCCAATCTTAATTAGCTTGTCAGCTCTAACTGAAGACCAACTTATGCAGGTCCTCACAGACCCAAAAAATGCTCTTGCTAAGCAATACAAGAAATTGTTTAGCATGAATAATGTAAAACTACACTTCACACAGAAAGCTCTGAGACTGATTGCAAAGAAAGCAATGGCCAAAAATACTGGTGCCAGGGGTTTAAGAGCCCAACTGGAAAGCATTTTAACTGAAGCCATGTTTGAGATTCCAGATGTTAAGGCAGGAAATGAACTGATTGATGCTGTTGTTGTTGATGAGGAGTCAGTAGGATCAATAAATGCCCCTGGTTGTGGAGGAAAAATTCTACGTGGAGATGGCGCTTTGGAGCGGTACCTAGCTAAGGCGGAGGATTCAGTGGTTAACGGTGACGTAGCTGAGCCAGACTTACAAGAGGGGGAAACTGAGATTTCATCAAGAGCCATGAGCATGTAA 1632 0.4363 MSMSRIIFSAWKKKKKKLHLNQLPTLSSSYCSSHTHFTLSPHHHNHWFSFSLFSTHSNNNHLQLHFAAQRHSIAPLQSIGGHGDDDGDGVAVHTPPGPPFAPGLNLIRAEKTSSSWGGSNLGKDFPTPKEICKGLDKFVIGQHRAKKVLSVAVYNHYKRIYHASLQKGSGEESGVSEGLDDDDHVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATSLTQAGYVGEDVESILYKLLAAAEFNVQAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDNIQIDTKNILFMCGGAFVDLEKTISERRQDSSIGFGAPVRANMRTGGVTHASVTSSLLESVESADLIAYGLIPEFIGRFPILISLSALTEDQLMQVLTDPKNALAKQYKKLFSMNNVKLHFTQKALRLIAKKAMAKNTGARGLRAQLESILTEAMFEIPDVKAGNELIDAVVVDEESVGSINAPGCGGKILRGDGALERYLAKAEDSVVNGDVAEPDLQEGETEISSRAMSM* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01581 543 SMART ClpB_D2_small_2 399 492 IPR019489 -
Rops6g01581 543 CDD RecA-like_ClpX 126 396 - -
Rops6g01581 543 SMART AAA_5 188 350 IPR003593 GO:0016887
Rops6g01581 543 Gene3D - 119 397 IPR027417 -
Rops6g01581 543 Pfam C-terminal, D2-small domain, of ClpB protein 399 469 IPR019489 -
Rops6g01581 543 Pfam AAA domain (Cdc48 subfamily) 188 392 IPR003959 GO:0005524|GO:0016887
Rops6g01581 543 NCBIfam ATP-dependent protease ATP-binding subunit ClpX 119 489 IPR004487 GO:0005524|GO:0006457|GO:0051082|GO:0140662
Rops6g01581 543 FunFam CLP protease regulatory subunit CLPX3 mitochondrial 119 397 - -
Rops6g01581 543 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 124 485 IPR027417 -
Rops6g01581 543 FunFam ATP-dependent Clp protease ATP-binding subunit ClpX 398 501 - -
Rops6g01581 543 Gene3D - 398 498 - -
Rops6g01581 543 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 33 516 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01581 Rops-Chr6 32766020 32774385 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01581 192 291 Miscellaneous Gene Families AT3G02450 36.634 1.21e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01581 K03544 - gmx:100805340 773.467
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g00685 5 12181038 12189679 Rops6g01581 6 32766020 32774385 PCT