LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops5g00685	ATGTCTCGAATCTTCGTTAGATGGAAGAAAGTGACGTCACTTTCCGGGACCCACTTGGCCGTTCCGGCGAGTAACCGTTTCCGAACCGGGTTCAACTACCGGTTCAATCGGGTTCACCCAATTTCAACCCATTTAAACCACATCATCACCGGCGGCGCCGCCCATCGTCGCCGTGAGTCTCTGGTCGGAGTTCAGGAACGGTACAAGTGGGACCGGGGCGGGTCAGATGACAACCCGACCCGAAAGATTCGGGCAGAGGCTAATTGCCCACGTTGCACCAAAGACATGAACATTCTATTCTCTAATCGCCATTTTCCTGCAAATGAATCTGATTGTGGTTCAAATTTGGATCATGTTGGTGGTGATGGAAAAGAAGGTGGTTACCAAGCAGTAAATCTTTGTCCAAGTTGCAAAACTGCTTATTATTTTCGCCCTTTCAACACTACACCTTTGCAAGGTACGTTTGTGGAGATTGGTAGGGTCACTAATAATAATGGGAGTGGAAAGTCTCAATCTCATAGGAGGATCACACATGGAAAAGGTGGTGGAGGAAAAGAGAGCAGTAGTGGTAAGAATGGTAATGGGGGAGAGGATTTTGGGGTTAAGGGTAGTGCAAGTAATTGGCTTGAAGTGTCATCTTGGGATACTTTGAGATCTTATAATGGTGGTGGTAATGGTAATAATAATGGGGAGCCACCTGAGTCATGGCCTCCATTACCAGATGGTAGTAATGGGGATGGGAATGGGAATGGTTTGGCAGTGCATACTCCTCCAGGTCCTCCTTTTGCACCTGGGATTAATGTTATCCGGGCTTCGGGGCCGAGGGGAGGCGGTTCTGGTGGTGGCAGAGGGGGCAATGGAGAGAAGACCAAGTGGGGAGGGTCTAATTTGGGGAAGGATTTGCCCTCACCAAAGGAGATATGCAAGGGTCTTGACAAGTTTGTAATTGGCCAAGATAGAGCCAAGAAGGTGCTTTCTGTAGCTGTTTATAACCACTATAAAAGAATATACCATGCCACTTTACGGAAAGGGTCAGGCGCAGATTTGGGAATTTCGGAAGTAGTAGATGATGACGAAAATGTGGAGCTAGAAAAGAGTAATGTTCTCTTGATGGGTCCAACAGGGTCAGGGAAGACATTACTTGCAAAAACACTAGCTCGATTTGTGAATGTTCCATTTGTCATTGCCGATGCAACAGCCTTAACACAGGCCGGTTATGTTGGAGAAGATGTTGAATCAATACTGTATAAACTACTTGCGGCAGCAGATTTCAATGTTGCTGCAGCTCAACAAGGAATAATTTACATTGATGAAGTTGACAAGATAACTAAGAAGGCTGAGAGCTTAAATATCGGTCGGGATGTTTCTGGTGAGGGTGTTCAGCAGGCATTATTAAAAATGCTTGAAGGAACTTTAGTGAATGTTCCAGAGAAAGGAGCTAGGAAGCATCCGCGGGGAGATAACATCCAGATGGACACAAAGAATATTCTTTTTATATGTGGTGGAGCATTTATTGATCTTGAAAAAACAATTTCGGAGAGACGACAAGATTCCTCAATTGGTTTTGGAGCACCAGTTCGAGCCAATATGAGAACTGGTGGAATAATAAATTCTGTAGTAACATCATCTTTACTTGAATCGGTGGAAAGTGCTGATCTTATTGCATATGGTCTCATACCTGAGTTTATTGGACGATTCCCCATCTTAGTTAGCTTGGCAGCTTTAACTGAAGTCCAACTTATGCAGGTCCTCACAGAACCAAAAAATGCTCTTGGTAAGCAGTACAAGAAGTTGTTTAGCATGAATAATGTAAAGCTACACTTCACAGAGAAAGCTCTGAGACTGATAGCAAAGAAAGCAATGGCCAAAAATACAGGTGCCAGGGGTTTAAGAGCCCTAATTGAAAGTATTTTAACAGAAGCCATGTTTGAGATTCCAGATATTAAGACAGGAAGTGACCGGGTTGATGCAGTTGTTGTTGATGAAGAGTCAGTAGGATCACTAAATGGCCCTGGATGTGGAGGGAAAATTCTTAGAGGAGATGGTGCTTTGGAACAGTACCTAGCTAAGATGAAGGATTCAAGGGTGACTGTTGATGTAGCTGAATCAGATTCACAAGAGGGAGATTCGGATATTTCATCAAGAGCCATGAGCATGTAA	2160	0.4426	MSRIFVRWKKVTSLSGTHLAVPASNRFRTGFNYRFNRVHPISTHLNHIITGGAAHRRRESLVGVQERYKWDRGGSDDNPTRKIRAEANCPRCTKDMNILFSNRHFPANESDCGSNLDHVGGDGKEGGYQAVNLCPSCKTAYYFRPFNTTPLQGTFVEIGRVTNNNGSGKSQSHRRITHGKGGGGKESSSGKNGNGGEDFGVKGSASNWLEVSSWDTLRSYNGGGNGNNNGEPPESWPPLPDGSNGDGNGNGLAVHTPPGPPFAPGINVIRASGPRGGGSGGGRGGNGEKTKWGGSNLGKDLPSPKEICKGLDKFVIGQDRAKKVLSVAVYNHYKRIYHATLRKGSGADLGISEVVDDDENVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATALTQAGYVGEDVESILYKLLAAADFNVAAAQQGIIYIDEVDKITKKAESLNIGRDVSGEGVQQALLKMLEGTLVNVPEKGARKHPRGDNIQMDTKNILFICGGAFIDLEKTISERRQDSSIGFGAPVRANMRTGGIINSVVTSSLLESVESADLIAYGLIPEFIGRFPILVSLAALTEVQLMQVLTEPKNALGKQYKKLFSMNNVKLHFTEKALRLIAKKAMAKNTGARGLRALIESILTEAMFEIPDIKTGSDRVDAVVVDEESVGSLNGPGCGGKILRGDGALEQYLAKMKDSRVTVDVAESDSQEGDSDISSRAMSM*	720

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops5g00685	719	MobiDBLite	consensus disorder prediction	162	203	-	-
	Rops5g00685	719	MobiDBLite	consensus disorder prediction	699	719	-	-
	Rops5g00685	719	PANTHER	ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED	84	693	-	-
	Rops5g00685	719	FunFam	ATP-dependent Clp protease ATP-binding subunit ClpX	574	677	-	-
	Rops5g00685	719	SMART	AAA_5	364	526	IPR003593	GO:0016887
	Rops5g00685	719	SMART	ClpB_D2_small_2	575	665	IPR019489	-
	Rops5g00685	719	MobiDBLite	consensus disorder prediction	219	298	-	-
	Rops5g00685	719	CDD	RecA-like_ClpX	302	572	-	-
	Rops5g00685	719	Gene3D	-	574	673	-	-
	Rops5g00685	719	NCBIfam	ATP-dependent protease ATP-binding subunit ClpX	298	665	IPR004487	GO:0005524\|GO:0006457\|GO:0051082\|GO:0140662
	Rops5g00685	719	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	300	660	IPR027417	-
	Rops5g00685	719	Gene3D	-	295	573	IPR027417	-
	Rops5g00685	719	Pfam	AAA domain (Cdc48 subfamily)	364	568	IPR003959	GO:0005524\|GO:0016887
	Rops5g00685	719	Pfam	C-terminal, D2-small domain, of ClpB protein	575	644	IPR019489	-
	Rops5g00685	719	FunFam	CLP protease regulatory subunit CLPX3 mitochondrial	295	573	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops5g00685	Rops-Chr5	12181038	12189679	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops5g00685	K03544		-	gmx:100805340	1057.74

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Rops5g00685	5	12181038	12189679	Rops5g00685	5	12181038	12189679	ECH
	Rops5g00685	5	12181038	12189679	Rops6g01581	6	32766020	32774385	PCT