Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01289 ATGGCTGTTTCAATCTCAAACATGCTTTTTCCCTTGTCCAAAACCTACGAAGCTAACTTCGGATCAACCCAAACCAGATTAATCCCAACAGCACCACCATCATCACTAACCCAAAATAACCAAAAATCAAGAAGTCTCATCGTGCGTAAAAACTACATCAGCATCATCGGTGAGCTCCAGAGAGATGAACAAGAACAAGAAACAATGCATGACATTGACACTCACATAAACAGAACAAAACCCAAATCAGAGGAACAACAGCGACTACTATCCGAAGAGTGGCGCGAAATCCACGGAGAAAACGACTGGGCCGGGCTTCTGGATCCAATGGACCCAATCCTACGTCAAGAACTGATCCGTTACGGCGATATGGCCCAGGCCTGTTACGACGCATTCGACTTCGACCCATTCTCCAAATACTGCGGAAGTTGCCGTTTCACGCGCCACAACTTCTTCTCTTCCCTTGGTATGTCCCACCACGGCTACAACGTCACGCGCTACCTCTACGCCACCGCCAACATCAACCTCCCTAATTTCTTCAAACACTCACGCTGGCCCAAGATGTGGAGCAAAAACGCCAACTGGGCTGGATACGTCGCCGTTTCGGACGACGCCGCCACAAAACGACTCGGTCGTAGGGACATAACAATCGCGTGGCGTGGCACCGTCACGCTCCTCGAGTGGGTAGCAGACCTCATGGATTTCCTCAAACCAATTTCATCAAACTCAATCCCATGCCCCGATCGAACGGTTAAGGTTGAATCTGGCTTCTTAGAACTCTACACCGACAAGGAACAAACGTGCGGTTATTGTAGGTACTCAGCGAGGGAACAGGTTTTAACTGAGGTTAAGAGGTTGTTAGAGAAGTACCCTAATGAGGAACTAAGCATTACTATAACGGGGCATAGTTTGGGGAGTGCTTTGGCTATTCTGAGTGCTTATGATGTGGTTGAAACTGGGTTGAATGTTTTGGGGGATGGACGTGCCGTTCCGGTTTCGGTGTTGTCGTTTTCAGGTCCGAGGGTTGGGAATGTGAGGTTCAAGGAGAGGTTGGAAACGCTTGGGGTGAAGGTGTTGAGGGTGTTGAACGTGCATGATATGGTGCCTAAGTCGCCGGGGTTTTTGTTTAACGAGCAGGTGTCGCCGGCGGTTATGAAGTTAGCGGAGGCTTTGCCGTGGAGTTATTCGCATGTTGGGGTGGAACTGGCGTTGGATCACAAGAACTCGCCGTTTCTTAACCCTAATGCGGATGCTGGCTGTGCTCATAATCTCGAGGCTCTCTTGCATTTGATTGACGGATACCATGGAAAGGGTCAAAGGTTTGTGCTAGCGACTGGAAGGGACCCTGCTCTGGTGAATAAGGCCAGTGATTTTCTGAAAGACCATTACTTGGTTCCACCATACTGGAGGCAAGATGAGAATAAGGGCATGATCAGGGGTCAAGATGGATGGTGGATGCAGCCTGAGAGACCAAAACTTGACGATCACCCTGAAGAAGATATTCATCACCATCTCAGGCAACTAGGTCTGGCTTCAACCGATGTTTGA 1548 0.4929 MAVSISNMLFPLSKTYEANFGSTQTRLIPTAPPSSLTQNNQKSRSLIVRKNYISIIGELQRDEQEQETMHDIDTHINRTKPKSEEQQRLLSEEWREIHGENDWAGLLDPMDPILRQELIRYGDMAQACYDAFDFDPFSKYCGSCRFTRHNFFSSLGMSHHGYNVTRYLYATANINLPNFFKHSRWPKMWSKNANWAGYVAVSDDAATKRLGRRDITIAWRGTVTLLEWVADLMDFLKPISSNSIPCPDRTVKVESGFLELYTDKEQTCGYCRYSAREQVLTEVKRLLEKYPNEELSITITGHSLGSALAILSAYDVVETGLNVLGDGRAVPVSVLSFSGPRVGNVRFKERLETLGVKVLRVLNVHDMVPKSPGFLFNEQVSPAVMKLAEALPWSYSHVGVELALDHKNSPFLNPNADAGCAHNLEALLHLIDGYHGKGQRFVLATGRDPALVNKASDFLKDHYLVPPYWRQDENKGMIRGQDGWWMQPERPKLDDHPEEDIHHHLRQLGLASTDV* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01289 515 FunFam Phospholipase A1-II 3 93 497 - -
Rops6g01289 515 CDD Lipase_3 148 408 - -
Rops6g01289 515 Gene3D alpha/beta hydrolase 93 500 IPR029058 -
Rops6g01289 515 PANTHER PHOSPHOLIPASE A1-IBETA2, CHLOROPLASTIC 33 491 - -
Rops6g01289 515 Pfam Lipase (class 3) 217 374 IPR002921 GO:0006629
Rops6g01289 515 SUPERFAMILY alpha/beta-Hydrolases 119 435 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01289 Rops-Chr6 28078014 28081344 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01289 78 510 Acyl Lipid Metabolism Gene Families AT2G30550 68.192 0.0 646
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01289 - - gmx:100779676 774.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03061 8 67945866 67952803 Rops6g01289 6 28078014 28081344 PCT