Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01287 ATGGCCACCATCTCCGCCACTACCACCACCCCATCGATCACCCGTGCAGCTCTTGTGCAAAAGCGACCTCTTGTGGTCTCATCCTCTCCCATTCTGGGTTTGCCAGCTATGGGCAAGGTGGGAAGAGTGAGGTGCTCCATGGAGGGGAAACCACCTGTGCAGGAAAGCAAGTCTTCAAACATGGGAATGGGGGCATCTTTGGTAGCTGCTGCTTGTGCTGCAGCCATGTCAAGCCCAGCAGCCATGGCTTTGGTGGATGAGAGATTGAGCACTGAGGGAACAGGGCTTCCCTTTGGACTCAGCAACAACCTTCTTGGTTGGATCCTTTTTGGTGTCTTTGGTCTCATTTGGGCTCTCTATTTTATCTATGCTTCTAGTCTTGAAGAGGATGAAGAGTCTGGATTGTCCCTTTAA 414 0.5169 MATISATTTTPSITRAALVQKRPLVVSSSPILGLPAMGKVGRVRCSMEGKPPVQESKSSNMGMGASLVAAACAAAMSSPAAMALVDERLSTEGTGLPFGLSNNLLGWILFGVFGLIWALYFIYASSLEEDEESGLSL* 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01287 137 Pfam Photosystem II reaction centre W protein (PsbW) 1 137 IPR009806 GO:0009507|GO:0009523|GO:0015979
Rops6g01287 137 PANTHER PHOTOSYSTEM II REACTION CENTER W PROTEIN, CHLOROPLASTIC 1 137 IPR009806 GO:0009507|GO:0009523|GO:0015979
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01287 Rops-Chr6 28062486 28063368 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01287 K02721 - gmx:100305788 172.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01287 6 28062486 28063368 Rops6g01287 6 28062486 28063368 ECH
Rops8g03062 8 67967637 67968378 Rops6g01287 6 28062486 28063368 PCT