Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01286 ATGAAGCAAATTCGTCAGCGCCAGAGGATTCTCATCCTCTCTTTGCTTTCTCTCTCCGTCGTTGCTCCTCTCGTTTTCGTCTCTCACAAGCTTAAGCTTCTCACTCCTATCGGGAGAAGTGAGTTTCTTGAAGATTTGTATCGTGTTACATACAGGACAGATACTTTGAAATTAAATGCTGTAGAACAGGAAGGTTCTGAAGAATTAGAAGAGCCAAATCAAGTTGTTTATAAAGAAAAAGATGTTGTTTCAACAATTAGTTATAAATCAGAAAAGAAGAATGATTCTGAGGAATCTACAATTGCAGGGTACAGAAGAAATGGATTTAACCATGATAAAAGACAACACCGGGGAGCTCAGCAGAAAGATCTATCCTCCATGGCTGAAGATACGAATATACATGCTTATTCACAGAGAAGGTCAAAGGAGAACATTGAATTGAAAAATAAGCAATCTGGTCAAAAAGCAGCCCATCATCATCATATTTTGAATTCTCGCTCTGATAGAATGAAAATTCAGAAGGTTCAAGAGATTAAGGATCAAATTCTTATGGCTAAAGCATACTTGAATTTTGCACCACCAAGCAGCAACTCACGCTTGAAGGAGCTGGAGCTGCTAATGAAAGAGATGGAACAAGCAATTAGAGAAGTCACCCAAGATTTAGATTTGTCATGGAGTGTTTTGCAGAAAATGAGACTCATGGAGGCTTCACTGTCTAAAATCACCCGTGCTTTCCCAGACTGCTCTTCTATGGCTGCTAAGCTTCATGCAATGAAGCGTAACACTGAAGAGCAAGTCCGTTCTCTGCGATATCAAGCAACATATCTTGTCCATCTTGCTGCAAGGACCGCCTCAAAAGGCCTCCACTGTCTTTCTATGCGGCTGACTGCAGAATACTTTGCCCTGAGGCCTGAGGAGAGAAAGCTTCCAAATGAAAATAAGATTCATCATCCAGAACTGTATCATTATGCTATCTTCTCTGACAATGTTCTGGCATGTGCAGTTGTTGTTAACTCTACTGTCTCTACTGCCAAGGCTCAGGAGAAACTTGTTTTCCATGTAGTAACCAAGTCACACTACCTACCAGCAATCTCAATGTGGTTCTTAATAAACCCTCCTGGCAAAGCCACAGTCCACATACAGAGCATGGACAACTTGGAATGGTTGTCCAAGTACAATACCTTCGATAAAAATAATTCCCGCGATCCAAGATACACTTCTGGATTGAACTACCTGCTTTTCTACCTGCCAGACATTTTCCCTGCCCTAAACAAGATTGTGCTCTTTGATCATGATGTGGTGGTGCAACAAGATCTCAGTGAACTATGGAATGCCAATATGAAGGGAAACGTAATTGGAGCAGTTGGAACTTGTCAGGAAGGCAAAACCTCATTTCATAGGATTGATACGTTCGTTAACTTCTCAGATCCATTAATTGCAGATAGGTTTGATGTCGATGCTTGCACGTGGGCATTTGGGATGAACTTGTTTGATTTGCAACTGTGGAGGGAACATAATTTAACTGCTGTCTATCACAAATATTTGCAAATGGGTTCTGAGAAGCCATTGTGGAATTGGAACACTGGACGTCTGCCTTTAGGCTGGCTCACCTTCTATAACAAGACAGAGTTGTTGGACAGACGATGGCACGTTCTTGGCCTTGGTCAATACTCAGGTGTCGATCGAAATGAGATTGAACGGGCTGCTGTAATACACTATGATGGGGTTAGGAAGCCATGGTTGGATATTGCAATGGGCAGATATAAAAGCTATTGGACCAAATTTTTGAATTTTGACCACCCTTCTTTCCTACAATGTAATCTCCAGGCATAG 1833 0.4152 MKQIRQRQRILILSLLSLSVVAPLVFVSHKLKLLTPIGRSEFLEDLYRVTYRTDTLKLNAVEQEGSEELEEPNQVVYKEKDVVSTISYKSEKKNDSEESTIAGYRRNGFNHDKRQHRGAQQKDLSSMAEDTNIHAYSQRRSKENIELKNKQSGQKAAHHHHILNSRSDRMKIQKVQEIKDQILMAKAYLNFAPPSSNSRLKELELLMKEMEQAIREVTQDLDLSWSVLQKMRLMEASLSKITRAFPDCSSMAAKLHAMKRNTEEQVRSLRYQATYLVHLAARTASKGLHCLSMRLTAEYFALRPEERKLPNENKIHHPELYHYAIFSDNVLACAVVVNSTVSTAKAQEKLVFHVVTKSHYLPAISMWFLINPPGKATVHIQSMDNLEWLSKYNTFDKNNSRDPRYTSGLNYLLFYLPDIFPALNKIVLFDHDVVVQQDLSELWNANMKGNVIGAVGTCQEGKTSFHRIDTFVNFSDPLIADRFDVDACTWAFGMNLFDLQLWREHNLTAVYHKYLQMGSEKPLWNWNTGRLPLGWLTFYNKTELLDRRWHVLGLGQYSGVDRNEIERAAVIHYDGVRKPWLDIAMGRYKSYWTKFLNFDHPSFLQCNLQA* 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01286 610 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 323 600 IPR029044 -
Rops6g01286 610 SUPERFAMILY Nucleotide-diphospho-sugar transferases 321 607 IPR029044 -
Rops6g01286 610 Pfam Glycosyl transferase family 8 290 584 IPR002495 GO:0016757
Rops6g01286 610 Coils Coil 200 220 - -
Rops6g01286 610 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 396 608 IPR029993 GO:0047262
Rops6g01286 610 MobiDBLite consensus disorder prediction 108 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01286 Rops-Chr6 28052200 28061676 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01286 1 610 Glycosyltransferase AT1G06780 48.403 0.0 580
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01286 K13648 - gmx:100819255 877.856
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01286 6 28052200 28061676 Rops6g01286 6 28052200 28061676 ECH
Rops8g03063 8 67968823 67975386 Rops6g01286 6 28052200 28061676 PCT