Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01004 ATGGGAGAGCAAAAGGAAGAGAAGCCAAAGAATAATGAAACCGAGAAGAAGCCCGAGGAGGGAGCAGCTAAGAAAGACGACGCACCCGCCCCTGTCGTTTACAAGCTCGACTTGCATTGCGAGGGATGCGTCAAGAAGATCAAACGCACCGTTCGCCATTTCGAAGGTGTGGAAACCGTTAAGGCAGATCTAACGGCTAACAAACTGGCAGTTACCGGTAAAATGGACGCCGTTAAGCTACGAGACAGGCTGACTGAAAAAACCAAGAAGAAGGTTGAACTCATCTCCCCTCCGCCCAAAAAAGACGCCCCCGCCGGCGAGAAACCACCGGAGAAGAAACCAGAAGAGAAGAAACCAGAAGAGAAAAAGCCAGAAGAAAATAAGCCCAAAGAGAGCACGGTGGTTTTGAAGATAAGATTGCACTGTGACGGTTGCATTACGAAAATTCGAAGAATCATTCGCAAGTTCAAAGGTGTGGAATCGGTGAACCTTGACGGAGACAAAGACTTGGTTACGGTTAAGGGAACGATGGATGTTAAGGAGCTCGTAGCATACCTAAAGGAGAGGCTTAAACGAAACGTGGATGTGGTCCCACCAAAGAAAGAAGAAGAAAAGAAAGAGAAAGCGAAAGACGGTGATGAGAAGAAAGAGAAAGAGGGTGAGAAGAAGAAAGAGGAGGGTGAAGCGGCGAAGGTGGAGGTTAACAAAATGGAGCATCAGTTTCCTTTAACAAATCCTATGTATTGGTACGATGGTCATGTTCCGGGTCAAACCAGTTACGCTACGGAGTTTCAACCTGGTTTCGCCAATCACTACATGGAACCAAGCTACGTAAACCACGGGTACATGAACCAGGGTTATCCAGTGCAGCAGCCAGCACCGTTCTACATGCACCCTCACCTCCCTCCTCCACAGATGTTCAGCGATGAGAATCCCAATGCTTGTTCCCTCATGTGA 957 0.4807 MGEQKEEKPKNNETEKKPEEGAAKKDDAPAPVVYKLDLHCEGCVKKIKRTVRHFEGVETVKADLTANKLAVTGKMDAVKLRDRLTEKTKKKVELISPPPKKDAPAGEKPPEKKPEEKKPEEKKPEENKPKESTVVLKIRLHCDGCITKIRRIIRKFKGVESVNLDGDKDLVTVKGTMDVKELVAYLKERLKRNVDVVPPKKEEEKKEKAKDGDEKKEKEGEKKKEEGEAAKVEVNKMEHQFPLTNPMYWYDGHVPGQTSYATEFQPGFANHYMEPSYVNHGYMNQGYPVQQPAPFYMHPHLPPPQMFSDENPNACSLM* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01004 318 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 6 12 318 IPR044594 GO:0046872
Rops6g01004 318 SUPERFAMILY HMA, heavy metal-associated domain 33 93 IPR036163 GO:0046872
Rops6g01004 318 ProSiteProfiles Heavy-metal-associated domain profile. 131 194 IPR006121 GO:0046872
Rops6g01004 318 MobiDBLite consensus disorder prediction 88 131 - -
Rops6g01004 318 SUPERFAMILY HMA, heavy metal-associated domain 133 188 IPR036163 GO:0046872
Rops6g01004 318 Coils Coil 215 235 - -
Rops6g01004 318 ProSiteProfiles Heavy-metal-associated domain profile. 29 100 IPR006121 GO:0046872
Rops6g01004 318 MobiDBLite consensus disorder prediction 1 31 - -
Rops6g01004 318 MobiDBLite consensus disorder prediction 198 228 - -
Rops6g01004 318 Gene3D - 29 102 - -
Rops6g01004 318 Gene3D - 130 204 - -
Rops6g01004 318 MobiDBLite consensus disorder prediction 104 131 - -
Rops6g01004 318 CDD HMA 38 93 IPR006121 GO:0046872
Rops6g01004 318 Pfam Heavy-metal-associated domain 137 184 IPR006121 GO:0046872
Rops6g01004 318 Pfam Heavy-metal-associated domain 37 90 IPR006121 GO:0046872
Rops6g01004 318 CDD HMA 140 184 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01004 Rops-Chr6 24074847 24076603 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01004 - - gmx:100779502 350.517
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01004 6 24074847 24076603 Rops6g01004 6 24074847 24076603 ECH
Rops8g03347 8 72186268 72188096 Rops6g01004 6 24074847 24076603 PCT