Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00980 ATGAAGCTTCAAAGAGAGAATACATATACCCTTCCAACTTTGCTCGTGCTTTTGATGATCTTGTTAGCTTCAACATCAATAAGAGCTCAAGAAGTTGAGGATGAGAGAGAATTCGATTATATTGAAGGAAGTGAAAAGGGGCCTAGTCACTGGGGAGAGCTAAAAGAAGAATGGGAAGCTTGTAAACATGGGGACATGCAATCTCACATAGACTTGTCCAGTAAGAGAGTCAAACTGATCCCAAATTCTCGCAAACTCAAGCCCAATTACAAAGCTTCTAATGCCACTCTCATCAACAGAGGCCATGATATTGCGGTATATTGGAGTGGTGATGCTGGCTCAATACGCATCAATGGAACCGAATTCTTTATGCAACAATGTCACTGGCACTCTCCTTCTGAACATTCCATCAATGGCAGGAAGTATGACTTAGAGATGCACATGGTGCATGTAAGCCCAGACCCCAGGGGAAACAAGATTGCTGTGGTTGGTGCCCTCTATAAGATTGGTCACCCTGATCCTTTTCTTTCTCAGTTGGAGGAAGACATAGAGCACATGGTTGATGAAGAAGAAGAAAGTGTAATAGGAGATAAAGATCCATCCCAAATCCAGACAAGAGGCAAGATTTATTACAGATACATAGGTTCACTCACCACTCCTCCTTGCACTGAAGGTGTCATCTGGAACATTGATAAGAAGATAAGGACAGTTTCAAAAGCACAAGTGAAGCTTTTGAGGGAGGCAGTGCATGATCCCAAAAACATAAAAACACCATACAAGAAAACAAAGGTAATCTCTTTGAGTCCAACTAAGATTTACTTGGAAGATACTGTTACTAGGCGGCGGCAGCAGCAGCAGCATTGCCCCAACCACTGTTACTACACCATGGCAGCAACCTCAACATCACTCGTTTCTTCAAACATTAACTCTCTCAACTCTAAAACTTTCTCTTCCACAACCACAGTCTCCTTCTTCCAAAATGTCCATTCTACCCTCTCCTTTTCTTCTGCTAAACCCTGCTGTGGTGTCGTCGCCATGGCTGGCTCTGGCAAGTTCTTTGTTGGTGGCAACTGGAAGTGTAATGGGACAAAAGACTCCATCAGTAAGCTTGTCTCTGACTTGAACAGTGCAACATTGGAGCCTGACGTTGATGTTGTTGTTGCACCTCCCTTTCTGTACATCGATCAGGTGAAAAACTCAATTACAGATAGGATTGAGATATCTGCCCAGAATTCTTGGGTGGGAAAGGGTGGGGCTTTCACAGGAGAAATCAGCGTGGAGCAACTAAAAGACCTTGGCTGCAAATGGGTTATTCTTGGACATTCTGAGCGAAGACATATAATTGGAGAAAATGATGAGTTTATAGGAAGGAAAGCTGCCTATGCATTGAGTGAGGGTCTTGGAGTGATAGCATGTATCGGAGAACTGTTAAAAGAAAGAGAAGCTGGGAAAACTTTTGATGTTTGTTTCCATCAATTGAAGGCATTTGCAGATGCAGTGCCAAGTTGGGATAATATAGTTATTGCATATGAGCCTGTATGGGCAATTGGAACTGGCAAAGTGGCCACACCCCAGCAAGCACAGGAAGTACATGCAGCTGTTCGTGATTGGCTTAAAAAGCAAGTCTCAGCTGAAGTTGCATCTAAAACACGAATCATTTATGGAGGGTCTGTAAATGGGAGCAACAGTGCTGAGCTGGCAAGGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAGGGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTGCGGCTTAA 1806 0.433 MKLQRENTYTLPTLLVLLMILLASTSIRAQEVEDEREFDYIEGSEKGPSHWGELKEEWEACKHGDMQSHIDLSSKRVKLIPNSRKLKPNYKASNATLINRGHDIAVYWSGDAGSIRINGTEFFMQQCHWHSPSEHSINGRKYDLEMHMVHVSPDPRGNKIAVVGALYKIGHPDPFLSQLEEDIEHMVDEEEESVIGDKDPSQIQTRGKIYYRYIGSLTTPPCTEGVIWNIDKKIRTVSKAQVKLLREAVHDPKNIKTPYKKTKVISLSPTKIYLEDTVTRRRQQQQHCPNHCYYTMAATSTSLVSSNINSLNSKTFSSTTTVSFFQNVHSTLSFSSAKPCCGVVAMAGSGKFFVGGNWKCNGTKDSISKLVSDLNSATLEPDVDVVVAPPFLYIDQVKNSITDRIEISAQNSWVGKGGAFTGEISVEQLKDLGCKWVILGHSERRHIIGENDEFIGRKAAYALSEGLGVIACIGELLKEREAGKTFDVCFHQLKAFADAVPSWDNIVIAYEPVWAIGTGKVATPQQAQEVHAAVRDWLKKQVSAEVASKTRIIYGGSVNGSNSAELARQEDIDGFLVGGASLKGPEFATIVNSVTSKKVAA* 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00980 601 CDD alpha_CA_prokaryotic_like 47 254 IPR041891 -
Rops6g00980 601 NCBIfam triose-phosphate isomerase 353 583 IPR000652 GO:0004807
Rops6g00980 601 ProSitePatterns Alpha-carbonic anhydrases signature. 133 149 IPR018338 GO:0004089|GO:0008270
Rops6g00980 601 FunFam Triosephosphate isomerase 346 595 - -
Rops6g00980 601 Pfam Eukaryotic-type carbonic anhydrase 47 254 IPR001148 -
Rops6g00980 601 SMART Carb_anhydrase_2a 40 255 IPR001148 -
Rops6g00980 601 Hamap Triosephosphate isomerase [tpiA]. 350 593 IPR022896 GO:0004807|GO:0006096
Rops6g00980 601 ProSiteProfiles Triosephosphate isomerase (TIM) family profile. 351 593 IPR000652 GO:0004807
Rops6g00980 601 SUPERFAMILY Triosephosphate isomerase (TIM) 349 594 IPR035990 GO:0004807
Rops6g00980 601 CDD TIM 352 592 IPR000652 GO:0004807
Rops6g00980 601 Gene3D Aldolase class I 334 600 IPR013785 -
Rops6g00980 601 Pfam Triosephosphate isomerase 353 593 IPR000652 GO:0004807
Rops6g00980 601 Gene3D Alpha carbonic anhydrase 34 283 IPR036398 -
Rops6g00980 601 SUPERFAMILY Carbonic anhydrase 37 255 IPR036398 -
Rops6g00980 601 PANTHER TRIOSEPHOSPHATE ISOMERASE 347 593 IPR000652 GO:0004807
Rops6g00980 601 ProSitePatterns Triosephosphate isomerase active site. 509 519 IPR020861 GO:0004807
Rops6g00980 601 ProSiteProfiles Alpha-carbonic anhydrases profile. 36 287 IPR001148 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00980 Rops-Chr6 23659398 23673917 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00980 K01803 - gmx:100798459 536.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g00980 6 23659398 23673917 Rops6g00980 6 23659398 23673917 ECH
Rops6g00980 6 23659398 23673917 Rops8g03371 8 72569663 72573655 PCT