Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00687 ATGACTTCAAGCCATTTGTCTTCTGCATCACGTTGTTATACTATGTCTTGCGAGGAAGATTACAATGAAGATCAAGAAAGTTCAGCCCCTAGTAGTCTTAAAAGAGTTAAAACATCCATGGCTTGGGATTATTTTGAGAAGTTTGTTGATGATAAAGGGCTTCCAAAGGCGAAGTGTAAAAGTTGTGGTAAAGTCTACATGTCAAGAGATGGTAGTGGAACTTCAAATATGAGACACCATGTGAAGAAATGTGGTGTAGAAGGGGAAGTATCTTCTTATCCGCCTCTTGATCAAGAAAAATTTCGAGAGAAGATATCTGAGCTTAAATACTCCATCTCTGACCTTTCCTTAACACAAATTCTTCGGCTCCCTTCTCTCTCTCTCTCTCTTTCACGTTGGACACAGAGGGAGAAAGACACAACACTTTCTAAACCTTCTCCTTCTGCTTCAGGTCGCGTGAAGATGGGAGGTGGTGGCCGAATCTCTGTTACTCCTACAGAAAGGAAATCAAAGAGTGAACAAGGGAAGAGGGTCCCACATGAAAAACCACCATTCAGTCTTAGCCAATTGAAGAAAGCAATTCCACCACACTGTTTTAAACGCTCCTTGATTCACTCATTTTCCTATTTGATCATTGATCTCACCATAGCCTCAACCTTAGCCTATATAGCAGTCAATTACTTTTCTACCCTTCCTCACAACCTCTCCTTCTTAGCATGGCCCCTTTACTGGGCTATCCAAGGCTCAGTCCTAACAGGGGTTTGGGTCATTGCACATGAGTGTGGCCACCATGCATTCAGTGATTATCAATGGCTTGATGATTTGGTTGGTCTTGTTTTTCATTCATGTCTCTTGGTACCTTATTTTTCATGGAAATATAGTCACCGCCGCCACCACTCCAACACTGGTTCTCTTGATCGTGATGAGGTTTTTGTTCCAAAGAAAAAATCTGGTATCAGTTGGTATTCTAAATACCTTAACAACCCACCAGGGAGAGTGTTAACACTTGCTATTACCCTCACTCTTGGTTGGCCTCTTTACTTGGCTTTCAATGTTTCAGGCAGACCCTATGATAGGTTTGCTAGCCACTATGACCCTTATGGCCCAATTTACTCAGATCGTGAAAGGCTTCAAATTTTTGTCTCAGATGCAGGGGTACTTGCAGTGTTTTATGGTCTTTACTGTCTTGTTTTAGCTAAAGGTCTTGCTTGGGTTGTTTGTGTTTATGGAGTGCCATTGTTAGTGGTGAATGGGTTCTTGGTGTTGATCACATTTTTGCAGCACACTCACCCTGCTTTGCCTCATTATGATTCTTCTGAGTGGGATTGGTTGAGAGGGGCTTTGGCTACTGTGGATAGAGATTATGGAATTCTGAATAAGGTTTTTCATAATATAACAGATACTCATGTGGTTCATCACATGTTTTCCACTATGCCTCATTATCATGCAATGGAGGCTACTAAAGCTGTGAAACCTATTTTGGGAGATTATTATCATTTTGATGGGACTCCTATTTATAAGGCAATGTGGAGGGAGGCAAAGGAGTGTGTTTATGTTGAACCTGATGAAGGTAGCCAGAGCAAGGGTGTTTATTGGTACAAAAATAAGATGTAA 1614 0.4139 MTSSHLSSASRCYTMSCEEDYNEDQESSAPSSLKRVKTSMAWDYFEKFVDDKGLPKAKCKSCGKVYMSRDGSGTSNMRHHVKKCGVEGEVSSYPPLDQEKFREKISELKYSISDLSLTQILRLPSLSLSLSRWTQREKDTTLSKPSPSASGRVKMGGGGRISVTPTERKSKSEQGKRVPHEKPPFSLSQLKKAIPPHCFKRSLIHSFSYLIIDLTIASTLAYIAVNYFSTLPHNLSFLAWPLYWAIQGSVLTGVWVIAHECGHHAFSDYQWLDDLVGLVFHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKKKSGISWYSKYLNNPPGRVLTLAITLTLGWPLYLAFNVSGRPYDRFASHYDPYGPIYSDRERLQIFVSDAGVLAVFYGLYCLVLAKGLAWVVCVYGVPLLVVNGFLVLITFLQHTHPALPHYDSSEWDWLRGALATVDRDYGILNKVFHNITDTHVVHHMFSTMPHYHAMEATKAVKPILGDYYHFDGTPIYKAMWREAKECVYVEPDEGSQSKGVYWYKNKM* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00687 537 MobiDBLite consensus disorder prediction 166 180 - -
Rops6g00687 537 ProSiteProfiles Zinc finger BED-type profile. 36 83 IPR003656 GO:0003677
Rops6g00687 537 SUPERFAMILY beta-beta-alpha zinc fingers 39 85 IPR036236 -
Rops6g00687 537 Pfam Fatty acid desaturase 239 499 IPR005804 GO:0006629
Rops6g00687 537 MobiDBLite consensus disorder prediction 137 183 - -
Rops6g00687 537 CDD Delta12-FADS-like 201 483 - -
Rops6g00687 537 PANTHER OMEGA-6 FATTY ACID DESATURASE, CHLOROPLASTIC 164 536 IPR012171 GO:0016491
Rops6g00687 537 Pfam Domain of unknown function (DUF3474) 130 221 IPR021863 GO:0016717
Rops6g00687 537 Pfam BED zinc finger 40 83 IPR003656 GO:0003677
Rops6g00687 537 SMART bed5 36 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00687 Rops-Chr6 17654113 17660842 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00687 155 537 Lipid Metabolism Gene Families AT3G12120 75.457 0.0 625
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00687 K10256 - gmx:100805040 689.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g00687 6 17654113 17660842 Rops6g00687 6 17654113 17660842 ECH
Rops8g02900 8 65041198 65047585 Rops6g00687 6 17654113 17660842 PCT