Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01116 ATGGCTGCGAAGCGCGTGTATGAAACATGGAAAGGAAGTAACAAATTCCTATTTGGAGGAAGGTTGATGTTTGGGCCTGATGCTAGGTCACTGCTGGTCACCTTGTTGCTGATTATTGTCCCGGTTATCATCTTTTGTGTATTTGTAGCAAGGCATCTTCGGCATGAATTTTCTTCATATAATGCAGGATATGCTATTTTGGTGGCGGCAGTTCTCTTTAATATTTATGTGCTGATTCTTCTCTTTCTTACTTCCTCCCGTGATCCGGGCATCATTCCGAGGAATTTACATCCACCAGAGGAAGAGTACCGTTATGATTCTTCAGTTTCTGTGGATATAGGGGGACGGCAAACACCAAGCCTTCAGTTCCCTCGAACAAAAGAAGTAATGGTCAATGGCCTACCTGTAAAGGTGAAGTATTGCGACACTTGTATGCTGTACCGTTCTCCTCGTTGCTCACATTGCTCCATTTGCAACAATTGTGTTGAACGTTTTGACCACCATTGCCCTTGGGTGGGCCAATGTATTGGACTGAGGAACTACCGTTACTTCTTTCTGTTTGTTTCTTCGGCAACTATTCTGTGTATCTATGTGTTTTCATTCTCAGCCTTTTACATCAAGGTTCTGATGGATCATTATCAGGGGACAGTTTGGAAGGCAATGAAAGAATCACCGGCATCTGTTATACTAATGGGATATTGTTTCATCTCTTTGTGGTTTGTTGGTGGACTAACTGGCTTTCATTTGTACCTTATCGGCACAAATCAGACCACCTATGAAAACTTCCGATACAGAGCTGACAACAGGATCAATGTTTACAATCGGGGTTGTTTAAATAATTTTCTAGAAGTATTTTGTACTAAAGTGAAGCCTTCAAGGAACAATTTCCGGGCTTTTGTTCAAGAGGAGGTACCAAGGCCACCCCCTCCAGTCATTGCCCGGGAACCTGAACCAGATATGGCTGGAGATCCTCGTTCTAAGGTTCAAGATGATTTGGATATCGGTGAAGACCTATTAAAGATATCACAGCGCCGTAATATTGAAGACATCGATGAGGACATCCGGAGTAGAGGGAGCAATGGACCTTCTCATAATACATCTGAAGCTGATTCAGTTTTGGGTTCGGATCGTCGAGCTCCAACAATTCGATCTGAGGCAAGACACTCAAGTTGGGGAAGGAGTGGAAGCTGGGAAATCGCGCCAGAAGTCCTCACTAATTCGAGTGTAACCGAAACTAGAAGCCATGTTGCTTCAAAGGAGGTGCACCAATGA 1272 0.4379 MAAKRVYETWKGSNKFLFGGRLMFGPDARSLLVTLLLIIVPVIIFCVFVARHLRHEFSSYNAGYAILVAAVLFNIYVLILLFLTSSRDPGIIPRNLHPPEEEYRYDSSVSVDIGGRQTPSLQFPRTKEVMVNGLPVKVKYCDTCMLYRSPRCSHCSICNNCVERFDHHCPWVGQCIGLRNYRYFFLFVSSATILCIYVFSFSAFYIKVLMDHYQGTVWKAMKESPASVILMGYCFISLWFVGGLTGFHLYLIGTNQTTYENFRYRADNRINVYNRGCLNNFLEVFCTKVKPSRNNFRAFVQEEVPRPPPPVIAREPEPDMAGDPRSKVQDDLDIGEDLLKISQRRNIEDIDEDIRSRGSNGPSHNTSEADSVLGSDRRAPTIRSEARHSSWGRSGSWEIAPEVLTNSSVTETRSHVASKEVHQ* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01116 423 PANTHER ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN 37 305 - -
Rops5g01116 423 MobiDBLite consensus disorder prediction 350 423 - -
Rops5g01116 423 MobiDBLite consensus disorder prediction 305 333 - -
Rops5g01116 423 MobiDBLite consensus disorder prediction 318 333 - -
Rops5g01116 423 MobiDBLite consensus disorder prediction 400 414 - -
Rops5g01116 423 Pfam DHHC palmitoyltransferase 139 263 IPR001594 GO:0016409
Rops5g01116 423 ProSiteProfiles DHHC domain profile. 139 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01116 Rops-Chr5 22991350 23023727 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01116 103 285 Lipid Metabolism Gene Families AT4G22750 29.952 2.51e-13 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01116 K16675 - gmx:100795934 775.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g01116 5 22991350 23023727 Rops5g01116 5 22991350 23023727 ECH
Rops5g01116 5 22991350 23023727 Rops6g02577 6 46414772 46420851 PCT