Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00823 ATGGGGGCTGGTATTTCTACAACTGCAACAGAAAATGATGATGGGGGGTCTCTTTTTTTGCCATCAGAGACTGTTTTTGATGATATCCCAGAGGGTTGGATCTCTTCCCTTTTGATGAGTTTTGATCCACAAGAGATTTGCAAATTGGCCAGAGTGAACAGAACTTTTCATAGAGCTTCCTCAGCTGACTTTGTTTGGGAATCAAAGTTGCCCCCAAGTTACAAATTCCTTGTCAATAAAGTTTTTGGTGAAGAAAAAGTTGGTTCTATGACCAAAAAAAAGATCTATGCCAAACTATGTAGACCCAATTTCTTTGATGGTGGTACCAAAGGAGTTTGGCTGGATAGATTCAGTGGACAAGTTTGTTTGTTCATTTCATCAAAATCCTTCAAGATAACAGGAATAGATGATAGAAGATATTGGAATTATATTCCAACTGAGGAATCCAGGTTCAAGAGTGTTGCATATCTTCAACAAATGTGGTGGGTTGAAGTATTAGGGGAGTTAGAGTTTGAATTTCCAAAAGGGAACTATAGCTTATTTTTCAGGCTTCAACTGGGCCGGACCTCAAAGAGATTGGGCCGGCGAGTTTGCAACCTTGATCAAGTGCATGGTTGGGGCATCAAGCCCGTTAGATTTCACCTATCTACATCTGAAGGCCAGAGTTCAGTCACCCAGTGTTATTTACGTGGGCCTGGAGAATGGACACATTACCATGTTGGAGACTTTGCCATTGACAAGCCCAGTGGGCCCACAACCATCAAGTTTTCTTTGGCCCAAATAGATTGCACACACACCAAAGGTGGTCTCTGCATTGATGAGGCATTGATTTGCCCAACTGAGTTAATTGACAAATTGAAACTATTTTAG 870 0.4138 MGAGISTTATENDDGGSLFLPSETVFDDIPEGWISSLLMSFDPQEICKLARVNRTFHRASSADFVWESKLPPSYKFLVNKVFGEEKVGSMTKKKIYAKLCRPNFFDGGTKGVWLDRFSGQVCLFISSKSFKITGIDDRRYWNYIPTEESRFKSVAYLQQMWWVEVLGELEFEFPKGNYSLFFRLQLGRTSKRLGRRVCNLDQVHGWGIKPVRFHLSTSEGQSSVTQCYLRGPGEWTHYHVGDFAIDKPSGPTTIKFSLAQIDCTHTKGGLCIDEALICPTELIDKLKLF* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00823 289 PANTHER F-BOX PROTEIN PP2-A15 21 281 - -
Rops5g00823 289 SUPERFAMILY F-box domain 23 99 IPR036047 GO:0005515
Rops5g00823 289 CDD F-box_AtSKIP3-like 26 71 - -
Rops5g00823 289 Pfam Phloem protein 2 121 279 IPR025886 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00823 Rops-Chr5 15724860 15728167 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00823 - - gmx:100816360 503.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g00823 5 15724860 15728167 Rops6g02791 6 50052968 50056178 ECH
Rops5g00823 5 15724860 15728167 Rops5g00823 5 15724860 15728167 ECH
Rops5g00823 5 15724860 15728167 Rops6g02791 6 50052968 50056178 PCT