Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00239 ATGAGTAGAAAGAAAAGGGTTACTTCCATTAATATTGAAGAGGCTGCAGTGGATTTCTTTAACCATCTCTTGCAGGAGAAGCCAAGGATTCCATTCTTTATTCCACTGATTCTGATTGCTTGGGTTATTGAGAGATGGGTCTTTTCTTTCTCCTCTTGGGTTCCTCTTGCACTTGCTGTGTGGACAACTATACAGTATGGGAGGTATCAACGCAAACTACTAGTGGAGGACTTGGATAAGAAATGGAAGAGAATCATACTGAACGTTTCGCCCATCACACCATTGGAGCACTGTGAGTGGCTGAATAAACTCTTGACAGAAATTTGGTCCAACTATTTTAACCCCAAGCTCTCAATAAGGTTATCAGCTATAGTTGAGAAACGTTTAAAGCTTCGGAAACCAAGACTTTTGGAAAGAGTTGAGCTTCAGGAGTTTTCACTAGGATCATGCCCTCCTAGCTTGGCTCTGCAAGGGATGCGCTGGTCAACTCTTGGTGATCAGCGAGTCCTGCAACTGGGTTTTGATTGGGACACAAATGAAATGAGCATTTTGATGCTTGCTAAGCTTGCAAAGCCATTGATTGGAACTGCACGGATTGTGATTAACAGTCTTCATATCAAGGGTGATCTTCTCGTTACACCAATTCTAGATGGAAAAGCACTTTTGTATTCGTTTGTATCAGCTCCTGAGGTAAGGATAGGAGTTGCCTTTGGAAGCGGTGGAAGCCAGTCACTTCCTGCTACTGAGTGGCCTGGTGTTTCTTCTTGGCTGGTAAAACTTTTTACTGACACCTTGGTTAAAACCATGGTGGAACCTCGGCGTCATTGTTTCACTTTACCTGCAGTTGATTTAAGGAAAAAGGCTGTCGGAGGCATTATATATATTAGAGTGATTTCAGCAAGTAAACTTTATAGGAGTTGCTTCAAGGCATCTAGGAGGCAACAAAATGGTACAACCAATGGTTCTTCAGAAGACAATGTTGATGACAGGGACCTACAAACGTTTGTAGAGGTAGAAGTTGAGGAATTATCCAGGAGAACAGATGCCAGACTGGGTTCAACCCCTAGATGGGATGCACCATTTAACATGGTTTTACATGATAATACAGGAACTCTTCGTTTCAATCTTTATGAGAGTCATCCCAGCAGTGTGAAGTGTGACTATCTTGCAAGTTGTGAAATCAAGATGAGGCATGTTGAAGACGATTCCACAATAGTGTGGGCAGTAGGACCTGATTCTGGGGTCATAGCAAAGCAAGCACAGTTTTGTGGTGATGAAATAGAAATGGTTGTCCCTTTTGAGGGGGCCAACTCTGGAGAGTTGAAGGTGAGCATTGTAGTGAAAGAGTGGCAATTTTCTGATGGTTCACATACCTTGAACAATCGCCGGACAAGCTCTCAGCAGTCACTTAGTGGATCATCAAATCTTCAATTAAAAACTGGAAGGAAACTTATCATAACCGTTGTGGAAGGAAAGGATCTTGCTGCAAAAGACAAATCTGGAAAATTTGATCCATACATTAAATTGCAGTATGGAAAGGTTGTCCCGAAAACAAGGACTTCTCATTCTCCAAATCCTGTCTGGAATCAAACGTTTGAATTTGATGAGCTTAGTGGTGGTGAATACTTAAAAGTTAAAGGCTTTAGTGAAGAAACTTTTGGAGATGAAAACATTGGTAGTGCACAAGTGAATTTGGAAGGACTTGTTGATGGCTCAGTAAGGGATGTATGGATCCCTCTTGAAAGAGTGCGTTCTGGAGAATTAAGACTTCAAATAGAAGCAGTTAGGATGGATGACCAAGAAGGATCAAGGAGTTCAGGTGGGGGCTCAGGGAATGGTTGGATAGAACTTGTTCTGATTGAAGGAAGGGATCTCATTGCTGCTGATCTCAGAGGCACTAGTGATCCATATGTGAGGGTACACTATGGAAACTTCAAGAAAAAGACAAAGGTTATATACAGAACTCTTAATCCTCAATGGAACCAGACCCTAGAGTTCCCTGATGATGGAAGTCCTCTTATGCTTTATGTCAAGGACCACAATGCATTACTACCTACCTCAAGTATAGGTGAATGTGTTGTAGAATATCAAAGGTTGCCCCCAAACCAGACAGCAGACAAGTGGATACCTCTCCAAGGCGTGAAAAAGGGTGAGATTCACATCCAAATTACTAGAAAAGTTCCAGAGATGCAGAAGAGGCAAAGTCTAGACTCTGAACCTTCCTTGAGTAAATTGCACGGAATTCCAAGTCAGATAAAACAGATGATGATCAAGTTCAGGTCTTTAATAGAGGATGGAAATGTTGAAGGACTCTCTACAACATTGAGTGAGCTACAAACTCTAGAGGATACACAGGAAGGGTATATAGTCCAATTGGAAACTGAGCAAATGCTTCTTCTCAGCAAAATAAAGGAACTTGGTCAAGAGATCATTAATTCTTCTCCTTCCCAGAGTGGAAGATCTTCTTAA 2469 0.4176 MSRKKRVTSINIEEAAVDFFNHLLQEKPRIPFFIPLILIAWVIERWVFSFSSWVPLALAVWTTIQYGRYQRKLLVEDLDKKWKRIILNVSPITPLEHCEWLNKLLTEIWSNYFNPKLSIRLSAIVEKRLKLRKPRLLERVELQEFSLGSCPPSLALQGMRWSTLGDQRVLQLGFDWDTNEMSILMLAKLAKPLIGTARIVINSLHIKGDLLVTPILDGKALLYSFVSAPEVRIGVAFGSGGSQSLPATEWPGVSSWLVKLFTDTLVKTMVEPRRHCFTLPAVDLRKKAVGGIIYIRVISASKLYRSCFKASRRQQNGTTNGSSEDNVDDRDLQTFVEVEVEELSRRTDARLGSTPRWDAPFNMVLHDNTGTLRFNLYESHPSSVKCDYLASCEIKMRHVEDDSTIVWAVGPDSGVIAKQAQFCGDEIEMVVPFEGANSGELKVSIVVKEWQFSDGSHTLNNRRTSSQQSLSGSSNLQLKTGRKLIITVVEGKDLAAKDKSGKFDPYIKLQYGKVVPKTRTSHSPNPVWNQTFEFDELSGGEYLKVKGFSEETFGDENIGSAQVNLEGLVDGSVRDVWIPLERVRSGELRLQIEAVRMDDQEGSRSSGGGSGNGWIELVLIEGRDLIAADLRGTSDPYVRVHYGNFKKKTKVIYRTLNPQWNQTLEFPDDGSPLMLYVKDHNALLPTSSIGECVVEYQRLPPNQTADKWIPLQGVKKGEIHIQITRKVPEMQKRQSLDSEPSLSKLHGIPSQIKQMMIKFRSLIEDGNVEGLSTTLSELQTLEDTQEGYIVQLETEQMLLLSKIKELGQEIINSSPSQSGRSS* 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00239 822 CDD C2 615 711 - -
Rops5g00239 822 Gene3D C2 domain 289 454 IPR035892 -
Rops5g00239 822 Gene3D C2 domain 466 597 IPR035892 -
Rops5g00239 822 Gene3D C2 domain 607 726 IPR035892 -
Rops5g00239 822 CDD SMP_SF 117 274 - -
Rops5g00239 822 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 482 593 IPR035892 -
Rops5g00239 822 ProSiteProfiles C2 domain profile. 462 578 IPR000008 -
Rops5g00239 822 ProSiteProfiles C2 domain profile. 584 709 IPR000008 -
Rops5g00239 822 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 612 724 IPR035892 -
Rops5g00239 822 SMART C2_3c 483 577 IPR000008 -
Rops5g00239 822 SMART C2_3c 614 708 IPR000008 -
Rops5g00239 822 SMART C2_3c 292 408 IPR000008 -
Rops5g00239 822 Pfam C2 domain 615 711 IPR000008 -
Rops5g00239 822 Pfam C2 domain 483 580 IPR000008 -
Rops5g00239 822 Pfam C2 domain 292 402 IPR000008 -
Rops5g00239 822 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 328 404 IPR035892 -
Rops5g00239 822 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 94 280 IPR031468 GO:0008289
Rops5g00239 822 PANTHER OS01G0128800 PROTEIN 4 820 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00239 Rops-Chr5 3661658 3668832 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00239 614 723 Lipid Metabolism Gene Families AT1G51570 31.148 2.96e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00239 - - gmx:100789237 1434.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g00239 5 3661658 3668832 Rops2g00207 2 3123371 3130107 ECH
Rops5g00239 5 3661658 3668832 Rops5g00239 5 3661658 3668832 ECH
Rops2g00207 2 3123371 3130107 Rops5g00239 5 3661658 3668832 PCT