Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00238 ATGGCATTCCCCAACACTGGTAAACTATCAGAACTTTCATTCAATTCATCACTATCACTCTCACTGAACCTTCCTCGTTCTTTCACTCTCACCCATCTCTTTCTCTCTCATTCCAAATCCTCATTTCGCACTCTCACTTTCTCTTCTCTCAAAACCACCCACCATTCCACCCCAAAACCCAACCCCACTGCACCATGGCTCACCAAAACCCCTTCTCCTACTCCTTCTCCCAAAAGGGTCACTGAATCTACCCCCAAAGAACCCCTTCACAGTAAACCAGATAAAGGGCAAAAATCAGTTGAGAGAATAGTACTTAGGTTGAGGAACTTGGGGTTGGCTGAAGAAGAAGATGAAGAAAAAGAAGATGAAGAAGTAAAGGTCAATTCTTTACCTGTTACTGGTGAAGAGAAATTGAGTGAGTTGTTGAAGAGGGAATGGGTTCGTCCGGATGCCATGGTAATGGATGAGGATAAGGAGGGTGATGAGGAAATGGTGTTGCCATGGCAGAGAGAGGAAGAGGTGAAGATGGTTAGTGGTGGTGGTGTTGAAGTGGGGTTGTGGAAAAAGAGGGTAAAGGCTCCAACTTTGGCTGAATTGACACTTGAGGATGAGTTGTTGAGGAGGTTGAGGAGAGAGGGTATGCGTGTTAGAGAGAGGATTAGTGTCCCAAAAGCTGGCCTAACACAGGAGGTTATGGATAAAATTCATGAAAGGTGGAGGAGGGAGGAGTTGGTGAGGCTCAAGTTTCATGAGGAACTTGCAAAGAACATGAAGATGGCTCATGAGATTGTTGAGCGTCGAACAGGAGGAATGGTTACATGGAGGTCAGGAAGTATTATGATGGTGTATCGTGGTACTAATTACCAAGGACCCATCTCTCAGAAGGAACTTGATGAAAAGGAAGGTGATGGATTTTTCGTGCCGGATGTCTCATCAGGAAGTTTGTCAAGAACAAAAGACAGTGATGCAACCTCATCTCTAGAGAAGAGTGAGCCAGTTGTGAGGAATCGAGAACATCCTGAAAAAATGACAGAGGAGGAAGCAGAGTACAATGCGCTGCTTGATGATTTGGGTCCTCGTTTTGTTGAATGGTGGGGTACAGGAATACTTCCTGTTGATGCTGATTTACTCCCCCCTACAGTTCCTGGTTACAAAACGCCTTATAGGCTTCTTCCTACTGGAATGCGTTCTCATCTAACTAATGCAGAGATGACCAATTTAAGGAAACTTGCAAAATCACTTCCTTGTCATTTTGCCTTAGGGAGAAATAGACACCACCAAGGTCTGGCATGCGCTATTCTTAAGCTTTGGGAGAAAAGTTTAGTTGCAAAGATTGCTGTCAAACGTGGTATCCAGAACACGAACAATAAAATAATGGCTGACGAGCTAACGACATTAACAGGAGGCACCTTGCTACTAAGGAATATATACTACGTTGTTATATATCGTGGGAAGGACTTTGTGCCAACAAATGTGGCTGCAGTTTTAGCTGAAAGACAGGAATTGACGAAACAGGTACAAGATGTTGAAGAGAAGGCGCGGTGCAGAGCTGTTAATGCAACTCCATCAGGACAAGGTGAAGCAACAGCACAGGCAGGATCTTTAGCAGAGTTCTATGAGGCCCAGGCTCGTTGGGGAAGGGAAATATCTCCCGAAGAACGCGAGCAGATGAAGGAAGAAGCAGCCAAAGCGAAGACTGTTAAGCTTGTCAGACATATTGAACATAAAATATATCATGCCCAGAACAAAAAGCTTAGAGCAGAAAGGCTTTTAGCCAAAATAGAAGCATCCATGGTTCCAGCTGGTCCTGATTATGACCAGGAAACAATCACAGATGAAGAACGTGTCATGTTCCGCAGGGTTGGTTTAAGAATGAAGCCATACTTACCACTTGGTATTCGTGGTGTTTTTGATGGTGTCATTGAGAATATGCATTTACATTGGAAACACCGAGAACTTGTAAAATTGATATCAAAACAAAAGACCCTTGCTTTTGTTGAAGACACAGCAAGGTTATTGGAATATGAGAGTGGTGGAATACTGGTGGCAATAGAGAGAGTTCCCAAAGGATATGCTCTTATTTACTATCGTGGAAAGAATTATAGCCGGCCCATTACTCTGAGGCCTAGAAACCTTCTTACGAAGGCAAAGGCATTGAAGCGTTCTATAGCCATGCAACGCCATGAGGCTCTGAGTCAGCATATTACAGAATTGGAAAAAACTATAGAAGAAATGAAAAAAGAACTTGGTATGTCTCAAGATTCGGAGGTTGAAGATGGGTGGAGCATAGAGGAAGAGGATCAAAACCAACTAGAAGACATCTCAAATTCCAACCAAAGTGAGGATGAAGATTCTGATGGTTTTGATGATGAGGAAGACATTGATTCGGATGATGGTTTTGATGATGAGGAAGACATTGATTTGGAAGATGATTTTGATGATGAGGAAGACATTGATTATGATGATGAGGAAGAGACTGAGTTTTCAAAATCTGACATTGATGAGCATCCTTGA 2514 0.4312 MAFPNTGKLSELSFNSSLSLSLNLPRSFTLTHLFLSHSKSSFRTLTFSSLKTTHHSTPKPNPTAPWLTKTPSPTPSPKRVTESTPKEPLHSKPDKGQKSVERIVLRLRNLGLAEEEDEEKEDEEVKVNSLPVTGEEKLSELLKREWVRPDAMVMDEDKEGDEEMVLPWQREEEVKMVSGGGVEVGLWKKRVKAPTLAELTLEDELLRRLRREGMRVRERISVPKAGLTQEVMDKIHERWRREELVRLKFHEELAKNMKMAHEIVERRTGGMVTWRSGSIMMVYRGTNYQGPISQKELDEKEGDGFFVPDVSSGSLSRTKDSDATSSLEKSEPVVRNREHPEKMTEEEAEYNALLDDLGPRFVEWWGTGILPVDADLLPPTVPGYKTPYRLLPTGMRSHLTNAEMTNLRKLAKSLPCHFALGRNRHHQGLACAILKLWEKSLVAKIAVKRGIQNTNNKIMADELTTLTGGTLLLRNIYYVVIYRGKDFVPTNVAAVLAERQELTKQVQDVEEKARCRAVNATPSGQGEATAQAGSLAEFYEAQARWGREISPEEREQMKEEAAKAKTVKLVRHIEHKIYHAQNKKLRAERLLAKIEASMVPAGPDYDQETITDEERVMFRRVGLRMKPYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQKTLAFVEDTARLLEYESGGILVAIERVPKGYALIYYRGKNYSRPITLRPRNLLTKAKALKRSIAMQRHEALSQHITELEKTIEEMKKELGMSQDSEVEDGWSIEEEDQNQLEDISNSNQSEDEDSDGFDDEEDIDSDDGFDDEEDIDLEDDFDDEEDIDYDDEEETEFSKSDIDEHP* 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00238 837 Coils Coil 728 755 - -
Rops5g00238 837 MobiDBLite consensus disorder prediction 306 344 - -
Rops5g00238 837 ProSiteProfiles CRM domain profile. 608 708 IPR001890 GO:0003723
Rops5g00238 837 Gene3D - 609 709 IPR035920 -
Rops5g00238 837 Gene3D - 397 492 IPR035920 -
Rops5g00238 837 Gene3D - 199 300 IPR035920 -
Rops5g00238 837 SUPERFAMILY YhbY-like 200 292 IPR035920 -
Rops5g00238 837 ProSiteProfiles CRM domain profile. 397 494 IPR001890 GO:0003723
Rops5g00238 837 MobiDBLite consensus disorder prediction 768 837 - -
Rops5g00238 837 MobiDBLite consensus disorder prediction 83 100 - -
Rops5g00238 837 SUPERFAMILY YhbY-like 609 707 IPR035920 -
Rops5g00238 837 SMART CRS1_YhbY_2 610 697 IPR001890 GO:0003723
Rops5g00238 837 SMART CRS1_YhbY_2 201 284 IPR001890 GO:0003723
Rops5g00238 837 SMART CRS1_YhbY_2 399 483 IPR001890 GO:0003723
Rops5g00238 837 Pfam CRS1 / YhbY (CRM) domain 202 284 IPR001890 GO:0003723
Rops5g00238 837 Pfam CRS1 / YhbY (CRM) domain 399 483 IPR001890 GO:0003723
Rops5g00238 837 Pfam CRS1 / YhbY (CRM) domain 611 696 IPR001890 GO:0003723
Rops5g00238 837 FunFam CRM-domain containing factor CFM3B, chloroplastic 609 711 - -
Rops5g00238 837 MobiDBLite consensus disorder prediction 51 100 - -
Rops5g00238 837 FunFam CRS2-associated factor 1, chloroplastic 200 295 - -
Rops5g00238 837 MobiDBLite consensus disorder prediction 322 344 - -
Rops5g00238 837 MobiDBLite consensus disorder prediction 768 829 - -
Rops5g00238 837 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 43 791 IPR045278 GO:0000375|GO:0003729
Rops5g00238 837 Coils Coil 492 512 - -
Rops5g00238 837 SUPERFAMILY YhbY-like 398 490 IPR035920 -
Rops5g00238 837 FunFam CRS2-associated factor 1, chloroplastic 398 494 - -
Rops5g00238 837 ProSiteProfiles CRM domain profile. 199 295 IPR001890 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00238 Rops-Chr5 3648176 3655399 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00238 - - gmx:100788177 1110.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g00238 5 3648176 3655399 Rops5g00238 5 3648176 3655399 ECH
Rops2g00208 2 3130800 3139163 Rops5g00238 5 3648176 3655399 PCT