Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02254 ATGCTCTCAGAACTCCCTCTTTTCTCAAGGATTACACCTGCTTTCATGGAGTTGGAAACTTGTGTTACCCCTGTTAATAACAATGAGAAACCTGATTTGGGAACACAACCCAATAAGCGGAAGAGAAAGAAGTCTATTGTGTGGGAATACTTCACGGTGGAAACGGTTGGAGCTGGATGTACCAGGGCTTACTGTAAACAGTGTAAAAAATCATTTTCTTATATAACCGATTCAAAACTAGCTGGTACAAGTCATCTGAAAAGACACATTTCTTTGGGAATCTGTCAAGTAATTCGGCAGAAAAATCAACAATGTTCATATCCCAAAACTGGTGATTCTCGAGATGCTGCCAATCCACCCAAGAAACGGCCAAGAGCAACACCTGGGCATGCTGGTAATGGTATCTCATTTGATCAGGAGCGTTGCAACCTTGACATCGCTAAAATGATAATTTTACATGATTATCCTCTTCATATTGTGGAACATCAGGGTTTCATTGATTTTGTGCGGACTCTTCAACCCCAGTTCAATCCACTATGTTTAAATTCTGTTGAAGGGGATTGTGTTGCTATGTACCTAAGAGAGAAGCAAAATCTGTTGAATCTTATTAATGCGATTCCTGGAAGAGTCAATCTGACATTGGACTTATGGACTTCAAACCAGGCAACGGGGTATGTTTTTGTTCGAGGACACTTCATTGATGGTGATTGGAACTTACATCATCGTATTCTCAATGTTGTTAAAGTACCATTTCCTGATTCTGATGATTCCTTAAATCAAACTATAGTGACCTGCCTATCTGATTGGCATTTGGAGGGTCGGCTGTTTACCATTACTCTAGATAAATCCTTCTCAAGTGAGACTGTGATGGGGAATCTGAGAGGGCTTCTTTCTGTTAAGAACCCAGTGATTGTCAATGGACAGTTATTAAACCAAAATTGTTATGCCCGTGTTCTTAGTCGCCTTGCAGTTGATGCACTACGAACAATGAGAGAAATGATTAGCAAAGTTCGTGAGAGTGTGAAATATGTGAAATCTTCCGAATCCCATGAAGAGAAGTTCATTGAGCTGAAGAAACAACTACAAGTACCTAGTGTGATGAACCTTTTAATTGATGATCAGTGTAAATGGGACACAACATACCATATGCTTGTAGCTGCCTGTGAATTAAAGGAAGTCTTTGCTTGCTTTGATACCACCGATCCTGATTACACAATGACTCTTACTATGGATGACTGGGAGCAGGTTGAAACTCTCTGCACATATTTGAAGTATTTGTATGATGCAGCTAATGTTTTAAGTGCCCAACCATATCCAACTGCGAACTTATTTTTTCCTGAAGTGTCAAAACTCAAGCTGGAGTTGACTCATGCAGCCTTTAGCCAGGACCCTTTCCGTAGAAGTTTGATTTTGCCTTTGCACGAGAACTTTGATCAATATTGGAGAGAAAGCTGTCTCATCTTGGCAATTGCTGTAGCCCTGGACCCAAGACATAAAATGAAGCATGTGGAATTCACCTTTGCTAAGATATTTGGTGCGAATGCTGAGCCATGGATAAGAATAGTTGAGGATGGTCTTCGTGAACTATTCATTGAATATAACACACAAATGCTTACTTTAACAAATGGGGACGAAGGGGATGAGATTATGTTGAAGACAGAGCCATGCCAAGAAGGATCACTTGATGGTTCTTTTTTTATTGATGAAGATGGACTTTCCGACTATGAATTTTATATATCTGATTTTACTGGTATCCAGCAATTTAAGTCAGAATTGGATGAGTATTTGGAAGAGCCTCTGCTGCCCAAAGTAGAAGAATTTGATATTCTGAGCTGGTGGAGAGAAAATGGATTGAAGTATCCAACATTGTGTAGAATTGCATCCGATATTTTGTCTATATCAGTATCCACTATGTCTGCAGATTCTGTTTTTGACACACAAATTAGAAAAATGGATAGCTACCGGAGCTCTTTAGGCTCCCTTACTGTTGAGGCCCTTATTTGTACCAAGGATTGGTTCCAGCATAAATCTTTGCCTATAGATGTTTCAAATACACTTCCGAAAATGGAATTTTAG 2076 0.3955 MLSELPLFSRITPAFMELETCVTPVNNNEKPDLGTQPNKRKRKKSIVWEYFTVETVGAGCTRAYCKQCKKSFSYITDSKLAGTSHLKRHISLGICQVIRQKNQQCSYPKTGDSRDAANPPKKRPRATPGHAGNGISFDQERCNLDIAKMIILHDYPLHIVEHQGFIDFVRTLQPQFNPLCLNSVEGDCVAMYLREKQNLLNLINAIPGRVNLTLDLWTSNQATGYVFVRGHFIDGDWNLHHRILNVVKVPFPDSDDSLNQTIVTCLSDWHLEGRLFTITLDKSFSSETVMGNLRGLLSVKNPVIVNGQLLNQNCYARVLSRLAVDALRTMREMISKVRESVKYVKSSESHEEKFIELKKQLQVPSVMNLLIDDQCKWDTTYHMLVAACELKEVFACFDTTDPDYTMTLTMDDWEQVETLCTYLKYLYDAANVLSAQPYPTANLFFPEVSKLKLELTHAAFSQDPFRRSLILPLHENFDQYWRESCLILAIAVALDPRHKMKHVEFTFAKIFGANAEPWIRIVEDGLRELFIEYNTQMLTLTNGDEGDEIMLKTEPCQEGSLDGSFFIDEDGLSDYEFYISDFTGIQQFKSELDEYLEEPLLPKVEEFDILSWWRENGLKYPTLCRIASDILSISVSTMSADSVFDTQIRKMDSYRSSLGSLTVEALICTKDWFQHKSLPIDVSNTLPKMEF* 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02254 691 Pfam hAT family C-terminal dimerisation region 591 673 IPR008906 GO:0046983
Rops4g02254 691 SUPERFAMILY beta-beta-alpha zinc fingers 45 98 IPR036236 -
Rops4g02254 691 ProSiteProfiles Zinc finger BED-type profile. 42 102 IPR003656 GO:0003677
Rops4g02254 691 PANTHER BED FINGER-RELATED 186 677 IPR045259 -
Rops4g02254 691 Pfam Domain of unknown function (DUF4413) 434 533 IPR025525 GO:0003677
Rops4g02254 691 SUPERFAMILY Ribonuclease H-like 204 674 IPR012337 -
Rops4g02254 691 MobiDBLite consensus disorder prediction 105 134 - -
Rops4g02254 691 SMART bed5 42 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02254 Rops-Chr4 49259356 49263368 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02254 - - gmx:106799409 1093.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g02254 4 49259356 49263368 Rops4g02254 4 49259356 49263368 ECH
Rops7g00119 7 1720471 1723525 Rops4g02254 4 49259356 49263368 PCT