Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02252 ATGTCTGCTGCTGTGTGCGGAAGCAAGAGATCTTTCTTCGAAGAGCTTCCTCCTTCACCGCCACTCTCTAAGAGGCTCCGTTGCTCCTCCGCCACCTCTCCCATTCGTTTCCCTCCTCCCTCTCTCATCGATCACCTTCGCCCTCTCTTCCCTCACATGGATGACCACGTTCTTGAGAGAGCTCTCCAAGAATGTGGCAATGACCTAGATGCTGCCATCAAGAGACTGCACGAGCTTTGCTTGGAAACTGCTGATGGCAATTTAGGAACTGCTGAAGAATCGGATATTAATGTTAATGTGAATGAAGGAAAATTGGAAGATGATGGGAATACTTCTGCTTCTGAGAATCAGCCTGCTTTGAACAACCTTCCTGCTGATGGAGCAGAATGGATTGAATTTTTTGTCAGAGAGATGATGGTTGCTACTAGTGTTGACGATGCTAGAGCCCGAGCTGCTAGAATGCTGGAGGTTCTAGAGAAATCAATCACTGCACGAGCAACGGCTGAGGCAACCGATGTTCTTCAGAAGGAAAATTTGATGCTGAAGGAGCAAATCGAGGCGTTGATTAAGGAGAAAAATTCTTTTAAAAATGCCTTTAGGATACAACACGAACGATTTGCTGATTATGAGGAAAAGAACCAAGAGTTGCAGCATTTGAAGCAGTTGGTGTCTCAATACCAGGAGCAGATCAGAACTCTTGAGGTGAATAACTATGCTTTGGCAATGCATTTGAAGCAGGCTCAACAGGGCAACCCGTTTCCTGGGCGTTTCCCACCCGATGTCTTCTAA 789 0.4639 MSAAVCGSKRSFFEELPPSPPLSKRLRCSSATSPIRFPPPSLIDHLRPLFPHMDDHVLERALQECGNDLDAAIKRLHELCLETADGNLGTAEESDINVNVNEGKLEDDGNTSASENQPALNNLPADGAEWIEFFVREMMVATSVDDARARAARMLEVLEKSITARATAEATDVLQKENLMLKEQIEALIKEKNSFKNAFRIQHERFADYEEKNQELQHLKQLVSQYQEQIRTLEVNNYALAMHLKQAQQGNPFPGRFPPDVF* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02252 262 Pfam CUE domain 41 76 IPR003892 GO:0043130
Rops4g02252 262 Coils Coil 171 198 - -
Rops4g02252 262 CDD CUE 41 76 - -
Rops4g02252 262 Coils Coil 209 236 - -
Rops4g02252 262 PANTHER UBIQUITIN SYSTEM COMPONENT CUE PROTEIN 1 262 - -
Rops4g02252 262 MobiDBLite consensus disorder prediction 104 121 - -
Rops4g02252 262 SUPERFAMILY UBA-like 41 84 IPR009060 GO:0005515
Rops4g02252 262 ProSiteProfiles CUE domain profile. 38 83 IPR003892 GO:0043130
Rops4g02252 262 Gene3D - 40 87 - -
Rops4g02252 262 MobiDBLite consensus disorder prediction 102 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02252 Rops-Chr4 49240537 49246256 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02252 - - gmx:100813137 431.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g02252 4 49240537 49246256 Rops4g02252 4 49240537 49246256 ECH
Rops7g00123 7 1760079 1762250 Rops4g02252 4 49240537 49246256 PCT