Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02217 ATGAGCTATGCACATTACCATATGGGCTCCGGTAGTAGAACTGCTCGAAGAACTTTAGAGTTTGGGAAGACACATGTAGTGAGGCCCAAAGGAAAGCACCAAGCTACTATGGTTTGGCTGCATGGCCTTGGTGATAATGGTTTGAGCTCATATCAGCTCCTGGAATCCCTTCCACTTCCAAATATAAAATGGATTTGCCCAACTGCTCCTATCCGCCCTGTATCCTTACTTGGTGGTTTTTCTTGCACTGCATGGTTTGATATGAGAGAACTTTCAGAAGATGGTCCAGATGATTTGGAGGGTTTAGATGCCTCAGCAGCACATATTGCCAACTTGTTGTCAACAGAGCCAGCTGATGTTAAAGTTGGAATTGGAGGCTTCAGTATGGGTGCTGCAACAGCTCTTTACTCTGCTACTTGTTTTGCCATGGGAAGGAATGCAAATGGTATCCCCTACCCTGTCAACTTAAGGGCAGTTATTGGACTAAGTGGCTGGCTTCCAGGATCAAGGAACTTAAGGAACAAGATTGAAGTGTCACACGAAGCAAGAAGGAGAGCTGCTTCACTACCTGTTTTCCTAAGCCATGGAATCAGTGATGATGTAGTCCTCTACAAATATGGAGAGAAATCAGCCCAATCCTTAAGTTCAGCAGGGTTTCGATATATTACATTCAAATCCTATGATGGGCTTGGTCATTATACGGTTCCTAGAGAGATGGATGAGGTCTCCAATTGGCTTAGATCAAGGCTGGGACTTGATGGATCCTCATAA 771 0.4462 MSYAHYHMGSGSRTARRTLEFGKTHVVRPKGKHQATMVWLHGLGDNGLSSYQLLESLPLPNIKWICPTAPIRPVSLLGGFSCTAWFDMRELSEDGPDDLEGLDASAAHIANLLSTEPADVKVGIGGFSMGAATALYSATCFAMGRNANGIPYPVNLRAVIGLSGWLPGSRNLRNKIEVSHEARRRAASLPVFLSHGISDDVVLYKYGEKSAQSLSSAGFRYITFKSYDGLGHYTVPREMDEVSNWLRSRLGLDGSS* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02217 256 Pfam Phospholipase/Carboxylesterase 24 247 IPR003140 GO:0016787
Rops4g02217 256 SUPERFAMILY alpha/beta-Hydrolases 25 250 IPR029058 -
Rops4g02217 256 Gene3D alpha/beta hydrolase 15 251 IPR029058 -
Rops4g02217 256 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 1 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02217 Rops-Chr4 48862319 48865384 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g02217 1 254 Acyl Lipid Metabolism Gene Families AT5G20060 65.354 4.26e-127 359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02217 K06130 - gmx:100782153 489.574
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g02217 4 48862319 48865384 Rops7g00160 7 2236935 2240434 ECH
Rops10g00339 10 9628741 9636693 Rops4g02217 4 48862319 48865384 ECH
Rops4g02217 4 48862319 48865384 Rops4g02217 4 48862319 48865384 ECH
Rops7g00160 7 2236935 2240434 Rops4g02217 4 48862319 48865384 PCT