Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02208 ATGTCCAACACAGCTACTTCACAAACCAATTGCTCCTCTACTCTACTTGAGCTTCTCACAGAAATGAAGAAGCAATCCTATCCAGAATCAGTAACTTTCCCAGCAAAATCTCCATCACAATTCTCCTCTGAATGCTGGTTTGATGATGCATGCATCCTTGACATGGATTACTTTGTGAAGACCCTTTCTGGCATCAAGGCCAAAGGTGTTCGTGCAGACTTGATTGGTTCCATTATCACACACTATGCCTCCAAATGGCTCCCTGATCTCTCTGCAAATGACATGGCTGAAAAGGGTCTCACACAATTTGAAGAATCACCTGAAAGTGTCACAGCTTCATGGATGAAGAAGAGGTTCTTTGTAGAAACCTTAGTTGGTGTTCTGCCTCCTGAGAAGGATTCCATCCCATGCAACTTTCTTCTTCGCCTTCTCAGAACTGCTAACATGGTTGGTGTTGAGGCCACTTATAGACAAGAGCTTGAGAAGCGTATTTCATGGCAACTAGACCAAGCTTCATTGAAAGAGCTTGTCATTCCCTCTTTCAGTCACACTTGTGGGACTCTATTAGATGTTGAGCTTGTCATTAGGCTTGTTAAGAGGTTTGTGAGTTTGGATAGTGAGGGTGCTAAAAGTGGTGCTGCTTTGGTTAAGGTGGCCAAGTTGGTTGATTCCTATCTTGCTGAGGCTGCTGTTGATGCCAATTTGAGCTTGTCTGAGTTTGTTACTCTTGCTGGAGCTCTTCCAAGTCATGCAAGAGCAACAGATGATGGGTTGTACAGAGCCATTGATACTTATCTCAAAGCACATCCAGGTGTGTCAAAGCAAGAAAGGAAGGGTCTGTGTAGGTTGATTGATAGCCGGAAACTAACACCAGAGGCATCACTTCACGCAGCTCAAAATGAACGTTTCCCTGTGAGGGCTGTGATTCAGGTACTTCTCTCTGAGCAAAACAAACTCAACCGCCACATGGATTGGAGTGGCTCCATCATGAGTGGAACAAGAAGCCCAAATGGTGGATTCGATGTAAGGTCTCTCTCAAAGCGAGAAATGAACACCCAACAAATGGAGATAAGGAAGCTGAAGGAAGATGTTCGCAGGTTGCAAAAGCAGTGCAATGCCATGCAAGTGCAGTTAGAAAGGATGGTGGAGAAGAAGAAAGGGTTCTTCAAGTGGAAGAAGTTTGTGTTTACCAAAGGTGAGGGTATTATGGACAAAACTGAAAATGAAGTTGAAGAAGAAGTTGGGTTTGGAAGACACACACCTGCGGCTACAGACATGAACATGAAAACCAGGTTGGTGAATGTCAAAGGTAGGACTCCTCATAGGTGGAGGAAATCCATGTCCTGA 1347 0.4447 MSNTATSQTNCSSTLLELLTEMKKQSYPESVTFPAKSPSQFSSECWFDDACILDMDYFVKTLSGIKAKGVRADLIGSIITHYASKWLPDLSANDMAEKGLTQFEESPESVTASWMKKRFFVETLVGVLPPEKDSIPCNFLLRLLRTANMVGVEATYRQELEKRISWQLDQASLKELVIPSFSHTCGTLLDVELVIRLVKRFVSLDSEGAKSGAALVKVAKLVDSYLAEAAVDANLSLSEFVTLAGALPSHARATDDGLYRAIDTYLKAHPGVSKQERKGLCRLIDSRKLTPEASLHAAQNERFPVRAVIQVLLSEQNKLNRHMDWSGSIMSGTRSPNGGFDVRSLSKREMNTQQMEIRKLKEDVRRLQKQCNAMQVQLERMVEKKKGFFKWKKFVFTKGEGIMDKTENEVEEEVGFGRHTPAATDMNMKTRLVNVKGRTPHRWRKSMS* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02208 448 PANTHER OS12G0117600 PROTEIN 30 390 IPR043454 -
Rops4g02208 448 Pfam NPH3 family 45 294 IPR027356 -
Rops4g02208 448 Coils Coil 343 384 - -
Rops4g02208 448 ProSiteProfiles NPH3 domain profile. 44 318 IPR027356 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02208 Rops-Chr4 48777888 48780495 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g02208 43 319 EF-hand Containing Proteins AT3G44820 36.424 6.65e-53 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02208 - - gmx:100777676 720.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g02208 4 48777888 48780495 Rops4g02208 4 48777888 48780495 ECH
Rops7g00166 7 2345269 2347699 Rops4g02208 4 48777888 48780495 PCT