Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01608 ATGTTGTTGGAGAAAGCGGAAAAACTTGACATGGACAAAGTGATTGAGGAATTTGAGATGCTGACAAAAGATGCTGAGAGGGTTCAGAAGGAAACACTGAAAAGGATTTTGGAAGAAAACGCATCAGCTGAATACTTGCAGAGTTTGGGACTCAATGGAAGAACTGACCCTGAGAGTTTCAAGGCATTTGTTCCACTGGTCACTCACAAAGAATTGGAGCCTTATATCAATAGAATGATTGATGGAGATACTTCTCCTATTCTCACTGGAAAACCAATAACAACCATGTCTTTAAGTTCTGGTACTACTCAGGGGAAGCAAAAATATGTACCATGGAATGATGAATTGTTTGAAACCACAGTGCAGATATATCTCACTTCTTTTGCCTTTAGGAACAGAGAGTTTCCCATAAAAAGTGGAAAGGCCTTGAGCTTTATCTACAGCAGCAAGAAGTTCAAAACAAAAGGGGGTGTGATAGCAGGAACTGCTACAAACAATGTGTTCAGCAATGCAAGGTACAAACACACAATGAAGGCACTTCAATCCCCTTGTTGCAGCCCAGATGAAGTGATATTCAGTCCTGATTTTTACCAATCATTGTATTGCCATCTCTTGTGCGGACTAATTTTCCGGGAGGAAGTTCAGTTGGTGTCTTCTACATTTGCACATAGCATTGTCTATGCTTTTAGAACCTTTGAACAAGTGTGGGAAGAGCTTTGTAATGATATCCGAGAAGGGGTTCTAACCAGCAGGGTCACCGTTCCATCCATTAGAACTTCCATGTCTAAACTACTCAAACCAGACCCTGAACTAGCCAACTTGATCCACAAAAAGTGCATGGGATTGAGCAATTGGTATGGTTTGATACCAGAGCTTTTCCCCAATGTTAAGTATGTTTATGGGATCATGACTGGGTCAATGGAACCTTATTTGAAAAAGTTACGGCACTATGCTGGAGAGTTGCCTTTGTTGACTTCTGATTATGGAGCTTCTGAAGGGTGGATAGCAACAAATGTGAATCCAAGAGTGCCTCCTGAATTGGCCACTTATACTGTGCTTCCTCAAATTGGTTACTATGAATTCATCCCTCTGGAGGGAACTAAGGGAGATCCTACTTTTCTCTCTATTGATCCTCAACCAGTGGGGTTGACTGAAGTGAAGGTTGGTGAGGAGTATGAGATTGTTATCACCAATCCAGCAGGCTTATACCGCTATAGAATAGGAGATGTGGTCAAGGTTATGGGGTTCCATAACTCAACTCCACAACTCAAGTTTGTTCGTAGGAGCAATCTTTTGCTTACCATCAACATTGACAAGAACACTGAGAGTGATTTACAGTTAGCTGTGGAAGCAGCATCCAAATTGTTAGCAGAAGAGAAATTGGAAGTTGTTGACTACACTAGCCATGTTGATTTATCCAAAGAACCTGGGCACTATGTTATCTTCTGGGAAATTAGTGGTGAAGCTAGTGAAGAACTACTTGGTGAGTGCTGCAACTGTTTGGACAAGTCTTTTGTTGATGCTGGCTACACTAGTTCTCGCAAAGTTAATGGTATTGGGGCCCTTGAACTCCGAGTTGTTAGGAGAGGAACATTCCAGAAGATTCTTGAACATTATGTAGGAATAGGTTCAGCTGTGAGTCAGTTCAAGACACCAAGGTGTGTAGGTCCTACAAACACCAAAGTGTTGCAAATATTGTGTGAAAATGTTGTGAAGAACTATCTCAGTGTTGCTTTTGATTGA 1743 0.4142 MLLEKAEKLDMDKVIEEFEMLTKDAERVQKETLKRILEENASAEYLQSLGLNGRTDPESFKAFVPLVTHKELEPYINRMIDGDTSPILTGKPITTMSLSSGTTQGKQKYVPWNDELFETTVQIYLTSFAFRNREFPIKSGKALSFIYSSKKFKTKGGVIAGTATNNVFSNARYKHTMKALQSPCCSPDEVIFSPDFYQSLYCHLLCGLIFREEVQLVSSTFAHSIVYAFRTFEQVWEELCNDIREGVLTSRVTVPSIRTSMSKLLKPDPELANLIHKKCMGLSNWYGLIPELFPNVKYVYGIMTGSMEPYLKKLRHYAGELPLLTSDYGASEGWIATNVNPRVPPELATYTVLPQIGYYEFIPLEGTKGDPTFLSIDPQPVGLTEVKVGEEYEIVITNPAGLYRYRIGDVVKVMGFHNSTPQLKFVRRSNLLLTINIDKNTESDLQLAVEAASKLLAEEKLEVVDYTSHVDLSKEPGHYVIFWEISGEASEELLGECCNCLDKSFVDAGYTSSRKVNGIGALELRVVRRGTFQKILEHYVGIGSAVSQFKTPRCVGPTNTKVLQILCENVVKNYLSVAFD* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01608 580 Coils Coil 11 31 - -
Rops4g01608 580 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 8 579 IPR004993 -
Rops4g01608 580 Pfam GH3 auxin-responsive promoter 17 555 IPR004993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01608 Rops-Chr4 39360675 39364853 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01608 10 576 EF-hand Containing Proteins AT1G23160 39.003 9.51e-140 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01608 K14506 - gmx:100813492 1007.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g01608 4 39360675 39364853 Rops4g01608 4 39360675 39364853 ECH
Rops8g04222 8 84748323 84756120 Rops4g01608 4 39360675 39364853 PCT