Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01554 ATGTCGCAGTTGTTAGATAAAGCCAAGAACTTTGTGTCGGAGAAGATCAACGATGTGGCCAAGCCTGAAGCGAGTGTCACCGATATGGATTTCAAGCGCGTGAGCATGGATAGCCTCGAGTACTTGGCTAAGGTCTCTGTTTATAATCCTTATTCAACTTCAGTTCCCATTTGTGAGGTCAAGTACTCTTTCAAAAGTGGCACCAGGGAGATAGCATCAGGGACAGTACCAGACCCAGGATCATTGAAAGCAGAGGACACGACAATGGTGGATGTGCCGGTGAAGGTGCCATACAGCATATTGGTAGACTTGGCAAAGGACATTGGAGCTGATTGGGACATCGACTATCAATTGGATTTGGATCTCATTGTCGACCTTCCTGTCATTGGCAACTTCACCATTCCTCTTTCTCGCAAGGGACAGGTCAAGCTACCAAAACCTTTCTAA 447 0.4653 MSQLLDKAKNFVSEKINDVAKPEASVTDMDFKRVSMDSLEYLAKVSVYNPYSTSVPICEVKYSFKSGTREIASGTVPDPGSLKAEDTTMVDVPVKVPYSILVDLAKDIGADWDIDYQLDLDLIVDLPVIGNFTIPLSRKGQVKLPKPF* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01554 148 Gene3D - 17 148 - -
Rops4g01554 148 SMART why 24 141 IPR013990 GO:0009269
Rops4g01554 148 Pfam Late embryogenesis abundant protein 44 140 IPR004864 -
Rops4g01554 148 PANTHER - 3 147 IPR045043 -
Rops4g01554 148 FunFam Desiccation protectant protein Lea14-like 17 147 - -
Rops4g01554 148 SUPERFAMILY LEA14-like 1 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01554 Rops-Chr4 38648794 38650198 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01554 - - gmx:547533 244.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g01554 4 38648794 38650198 Rops4g01554 4 38648794 38650198 ECH
Rops8g01017 8 21377148 21378592 Rops4g01554 4 38648794 38650198 PCT