Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01483 ATGGATAATTCATCCAACTTTGATGAAAACTCTGATGTGGGTTATCAGCCTTCAACTTCTTCTGTGGATCAAAATGATCATTCAATCACTGAAACTGCTGGATACTCCCCATTCAGTGGTGATTCCTTTACATATTGCAGGACTAACTCTGAGGTCTCAAACTTATCTGAACCTATTGATGACCATAGCTATGCAAGTGAACCTTCACCTTCTCCATGGATGGCTATGAAACATGGAGCTAGTCATGCTGCTCTTTCCAGGTTAGGAATGAAGCAGCACAGGCATTCATTGGATGGAAAATCTGATGACCTTGATCTCTTGGAGTCAGAGCTTGAAACGATGAAAGAGAGATTTGCAAAGCTTCTATTGGGGGAAGACATGTCTGGTGGTGGGAAAGGTGTTTGCACTGCAGTTACAATATCGAATTCCATCACCAATCTCTATGCAACTGTATTTGGACAAAGTTTGAAGTTGGAGCCTCTGAAGCCTGAGAAGAAGGCTATGTGGAAAAGAGAAATGCACTGTCTTATGTCCGTGTGTGATTACATAGTAGAATTTGCCCCAACTGCACAATATTTAGAGGATGGCACAATTGTGGAGATGATGACAAGCAGACCAAGATCAGATATTTATGTCAACCTACCAGCTTTGCAGAAGCTTGACACAATGCTCATAGAAATATTAGATAGTTTCCAGGATACTGAATTTTGGTATGCGGAGCAAGGGAGCATATCAGGGAATTCAACTCGATCGCGTGCAGGCTCATTTCGAAAGATTGTTCAGAGGAAAGATGAGAAATGGTGGTTGCCAGTTCCTTGTGTTCACCCTGGTGGCCTCTCTGATAAGTCAAGGAAGCATTTGAGTGAGAAAAGAGACTGTGCTAATCAAATTCACAAAGCTGCCATGGCAATAAATAGCAGTGTTCTTGCAGAGATGGATATCCCAGAAACATACATAGCAAATCTTCCCAAGAGTGGAAGAGCAAGTCTGGGGGACTCAATTTACCGCTATATGCATTCTGCAGACAAGTTCTCACCTGACCATCTTCTTGACTGTCTCAAAATAAGTTCTGAACATGAAGCACTTGAGCTTGCAGATAAGGTTGAATCTTCAATGTTCACATGGAGACGAAAAGCTTGTCTGAGCCATTCAAAATCATCATGGAACAAGGTCAAGGATCTCATGGCTGATACAGACAGAAGTGACAAAAACTATGTCTTAGCTGAGAGAGCTGAGACTTTATTGTTTTGCTTGAAGCAAAGATATCCTGAACTTTCACAAACGTCCTTGGACACATGCAAGATTCAATACAACCAGGATGTAGGAAAAGCAATACTAGAGAGCTACTCAAGAGTATTAGAAGGCTTAGCATTCAACATTGTTGCTTGGACAGAAGATGTTCTTCATGCAGATAAATCAATGAGGAACCAAGATGTATAG 1440 0.4146 MDNSSNFDENSDVGYQPSTSSVDQNDHSITETAGYSPFSGDSFTYCRTNSEVSNLSEPIDDHSYASEPSPSPWMAMKHGASHAALSRLGMKQHRHSLDGKSDDLDLLESELETMKERFAKLLLGEDMSGGGKGVCTAVTISNSITNLYATVFGQSLKLEPLKPEKKAMWKREMHCLMSVCDYIVEFAPTAQYLEDGTIVEMMTSRPRSDIYVNLPALQKLDTMLIEILDSFQDTEFWYAEQGSISGNSTRSRAGSFRKIVQRKDEKWWLPVPCVHPGGLSDKSRKHLSEKRDCANQIHKAAMAINSSVLAEMDIPETYIANLPKSGRASLGDSIYRYMHSADKFSPDHLLDCLKISSEHEALELADKVESSMFTWRRKACLSHSKSSWNKVKDLMADTDRSDKNYVLAERAETLLFCLKQRYPELSQTSLDTCKIQYNQDVGKAILESYSRVLEGLAFNIVAWTEDVLHADKSMRNQDV* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01483 479 Coils Coil 97 117 - -
Rops4g01483 479 ProSiteProfiles PRONE domain profile. 101 479 IPR005512 GO:0005085
Rops4g01483 479 MobiDBLite consensus disorder prediction 1 36 - -
Rops4g01483 479 FunFam Rop guanine nucleotide exchange factor 14 103 344 - -
Rops4g01483 479 Gene3D PRONE domain, subdomain 1 345 479 - -
Rops4g01483 479 Gene3D PRONE domain, subdomain 1 104 344 - -
Rops4g01483 479 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 1 45 478 IPR038937 GO:0005085
Rops4g01483 479 FunFam Rop guanine nucleotide exchange factor 14 346 479 - -
Rops4g01483 479 Pfam PRONE (Plant-specific Rop nucleotide exchanger) 109 475 IPR005512 GO:0005085
Rops4g01483 479 FunFam Rop guanine nucleotide exchange factor 2 313 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01483 Rops-Chr4 37583054 37586597 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01483 - - gmx:100785956 865.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g01483 4 37583054 37586597 Rops4g01483 4 37583054 37586597 ECH
Rops8g01148 8 24195867 24199463 Rops4g01483 4 37583054 37586597 PCT