Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00576 ATGAAGCTTGCTATTAGAGCAGCATCAATCCAACCACGTGCATCATCCTTTTTTTCCAATCCCAACCCTACTTTCTCACCCTATGAATCCAACGCAACCTCACCATTCAACAAGTCTTTGTTCTCATGGAAACAACTCAAGCATCACTCAACCAAATGCAATTCCCCTAAACTCCGCCAAAAGTGGAAGCAATACCAAGGAATCAACCATTGGGAAGGCTTACTTGATCCTCTTGATGATAACCTACGTTTGGAAATCTTAAGATATGGCCATTTTGTAGATGCTACTTATCATTCCTTTGACTTTGATCCTTTTTCTCACACTTTTGCCACATGTCATTATTCAAAAAAATCACTCTTCAATCGATGCGGGTTGACAAATTACGGATATCGAATAACTAAGAATCTACGTGTCACATGTGGTACCCATGTTGGCACATGGATACCTAAAATGTCCAAGTGGACATGTACCCGATCCAGTTGGGTAGGATATGTGGCAATTTGTGAACACAAGAAAGAAATAATTCGTCTCGGTCGACGAGATGTGGTGATCGCATTTAGAGGAACAGCTACCTGCTTAGAGTGGTTGGAAAACCTACGTGCCACCTTAACATATTTACCGGGTAATGTTGAAGGTAAAGAAGAAGAAGAAGAAGATATTGTTGGTCCAATGGTGGAAAAAGGGTTTTTGAGCCTCTACACATCCAAAACAACCACACATGCAAGTTTACAAGAAATGATAAGAGAAGAAATTGGGAGAATAATCAAATCATACACCAATGAACCTCTTAGTTTAACCCTAACGGGTCATAGCCTTGGAGCCGCACTCGCAATCTTGAGCGCGTGTGATATAACCTCCACTTTCAAGAATGCACCAATGGTGACTGTTATTTCCTTTGGTGGGCCCCGTGTAGGAAATGAGAGCTTTAGAAAGAAATTAGAACAAAGTGGGATAAGAATATTGAGAATTGTGAATTCTGATGATGTTGTTACTAAGGTTCCAGGGTTTGTGGTGAATAATGATGACGTGGCAGGAAATGGTGATGTGAGCTTGTCCACGTGGCTGCATAGACGCGTGGAGGACATGCAATTGGTTTATGCTGACATTGGACAAGAGTTAAGGTTAAGTAGTAAGGAGTCACCATATCTCAAGAATGGAGATGTTGCCACGTGTCATGACCTCAAGACTTATCTTCACTTGGTGAAAAGTTTTGTAAGCTCCTCATGTTCCAAGAGAAAAGATCCTGTTTTGTAA 1254 0.4115 MKLAIRAASIQPRASSFFSNPNPTFSPYESNATSPFNKSLFSWKQLKHHSTKCNSPKLRQKWKQYQGINHWEGLLDPLDDNLRLEILRYGHFVDATYHSFDFDPFSHTFATCHYSKKSLFNRCGLTNYGYRITKNLRVTCGTHVGTWIPKMSKWTCTRSSWVGYVAICEHKKEIIRLGRRDVVIAFRGTATCLEWLENLRATLTYLPGNVEGKEEEEEDIVGPMVEKGFLSLYTSKTTTHASLQEMIREEIGRIIKSYTNEPLSLTLTGHSLGAALAILSACDITSTFKNAPMVTVISFGGPRVGNESFRKKLEQSGIRILRIVNSDDVVTKVPGFVVNNDDVAGNGDVSLSTWLHRRVEDMQLVYADIGQELRLSSKESPYLKNGDVATCHDLKTYLHLVKSFVSSSCSKRKDPVL* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00576 417 Gene3D alpha/beta hydrolase 61 416 IPR029058 -
Rops4g00576 417 PANTHER PHOSPHOLIPASE A1-IBETA2, CHLOROPLASTIC 50 414 - -
Rops4g00576 417 Pfam Lipase (class 3) 183 336 IPR002921 GO:0006629
Rops4g00576 417 CDD Lipase_3 130 339 - -
Rops4g00576 417 SUPERFAMILY alpha/beta-Hydrolases 127 377 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00576 Rops-Chr4 15603844 15605097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00576 57 413 Acyl Lipid Metabolism Gene Families AT2G44810 61.111 5.55e-161 459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00576 K16818 - gmx:106798329 639.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g00576 4 15603844 15605097 Rops4g00576 4 15603844 15605097 ECH
Rops4g00576 4 15603844 15605097 Rops8g00804 8 16715936 16717228 PCT