Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01654 ATGATTGAATATAAGGGTGAATTTGAAGAATCAGTGGTATCCCTTTTGTTGTTGTTGTTGTTTTGGGTAGCTGTTATTTTCATCTCTTTGGTTTTTGGAATGAGTAGGAATGATGGCAAGAAACAACAACACCTTCTTCATGGAGGTGATTTTGCTGGTAGTGGTAATGGTAGTGGTGGCAGAACCACCACCAGCAGCAACAACAATGGCTTTATTCCAAGCTCTTTCCGTGCTCTCTCCAGCTACCTGAGGATTGTTTCCTCCGGTGCTTCGACTGTTGCTCGGTCTGCGGCGGCTTCAGTTGCCTCGTCAATTAAGGATAGGGAAGGTGATGCTGACCGTGATCAGGTTATTTGGGCTGGGTTTGACAAGTTAGAGGGTGAGGGAGAAGTCATCCGACAAGTCCTTCTTCTAGGCTATCAGTCTGGCTTCCAGGTTTGGGATGTTGATGATTCAAATGATGTCAGTAACCTAGTTTCCAGACATGATGATCCTGTTTCTTTTATGCAAATGGTACCAAGTCCAATCATATCAAAGAAACCAGAAGACAAGTTTGCAGACAGGCGTCCATTGCTGGTGGTGTGTACAGATGGTTTCTTTGCTGGTAGAAGCAATGTCCAAGATGGGTTGACCACCCCTACCAATGAGGCCACTCTGAACTGCCATGACCAAGTGAATGGAAACCATCTGCCAACTACTGTTCAGTTTTATTCTATGAGCTCCAAATCATATGCTCATGTATTAAAGTTTAGATCAGCTGTTTTTTCTGTAAGGTGCAGTTCTCGAATAGTTGCTGTTTCTCAGACCACTCAGATACACTGTTTTGATGTCACAACTTTAGAGAGACAATATACTTTACTTACCAATCCTGTAGTCATCAGTTGTCCTGGTTCTGGAGCCATTGGCTATGGACCACTTGCGGTGGGTCCTAGATGGCTTGCTTATAGTGGAAGCCTAGTTGCAGTTGCCACTTCTGGGCGTGTCAGCCCACAGCATCTGACACCTTCTGCAAGCTTTCCTGGTTTTTCGTCAAATGAGAGCTTGGTTGTACATTATGCCAAAGAGTCTAGCAAGCATCTTGCTGCTGGAATTGTGACCCTTGGAGATATGGGGTATAAGAAACTTTCCAGATACTGCTCAGAGCTTCTCCCCGATAGCATTGGTTCTTTACAATCTGTAAATTCTGGGTCGAAGGGAAATGGAGTTGTTAATGGCCATTCAACAGATGTCGATAACACTGGAATGGTCATTGTGAGAGACATAGTCAGTAAAAATGTTGTTGCCCAATTCCGGGCCCATGAGAGTCCTATTTCAGCCTTGTGCTTTGATCCTAATGGCACCATGTTAGTGACTGCTTCCATTCAGGGGCATAACATTAATGTTTTTAAGATAATGCCTGGATATGAGAGTTTGTCAGCATCTGATGCTGGCCCTTCTCATGTTCATCTCTACCGGCTGCAACGTGGGTTTACAAATGCTGTTATCCAAGATATCAGTTTTAGTGTTGATAGCAAGTGGATTATGATTAGTTCCTCAAGGGGCACTAGCCATCTATTTGCTATAAATCCTCAAGGAGGATCTGTAAATATTCAGTCATATGATAGTAGTTTTACAGGAAAAAATGGCGGATTGGGTGTTATGACTAATCACCCTGTTCAATGGCCTCATAGTTCTGCCTTAGAAATTTCTAGCCAGCAGAGCCTTTGTGCTGCTGGCCCTCCAATCACACTTTCTGCTGTAAGTAGAATTAGGAATGGATCTAATGGCTGGAGAGGCACTGTAACTGGTGCTGCTGCAGCTGCAACAGGTAGGATGAATTCCCTTTCTGGGGCTATCACTTCGTCTTTCCATAACTTAAAAGGCAGCAGTGCCTTGTATGTTGATGGGAACTTTTCCAAGGAAAAGTATCATCTGTTGGTCTTTTTACCCACTGGTTCTATGATACAATATGCTTTGAAGACATTCAACGGTCAAGATTCAACTGTTGTTTCTAAATTAACGCCTGCTTATGAATCCACTCCTCAGACTGATGCAAGAGTAGTAGTTGAGGCTATCCAGAAATGGAATATAAGTTGGAGACATAGTCAGAAAGATCGAGAAGATACTATCGACATATATGAAGAGAATGGAATTTCAGACAGCACTAAAGTATATCCAGAGGAATCAAAAGAGGATAATATCATTAACCCTAATATCAAGAATGTAGCGATAAAATCAAATTCCTGTTCTGGGAAAGAGCAGCATTTTTATATTTCAGAAGCTGAACTGCAAATGCATGAAGCTAAGACTCCACTGTGGGCAAAGACTGAGATATATTTTCATTCAATGGGTAAAGAGGCTACTATTATGATGGATGAAGAAGCTGCTTCAGGAGGGGAAATGGAGATTGAAAAGATTCCAACTTGCATGATAGAAGCTAGGTCAAAAGATCTGGTTCCAATTTTTGACTATATTCAGACCCCAAAATTTCAACAAATGAGGACTCCTGCTGTGGATAACAAGTTAAATCAACAACTGTTGCATCAAAGTTCCAAGTTGTTTGAAAAGGGCAGGATTTCACCCAAGAGTATTTTGGGATCTCCGGAGTGTATTACTAATTCTGGTGGTCCTAATGCAGAATTTAAAAATGGGATTGAAGGAAATGAGTGGGATGATCATTTGATTCTAGCAGAAACAAAGGGTTTTGTAAATAACAGTGACACCCTTAAACCAAATACTAGGCATGAGTTTGTAAATAATAGAAGAGAGCTCTTAAACATGGAGGCTCAACACATGTTTGTAAATAGTGACAGAGACGGCATGAAAATGGAGAATCCCTATGAAGAAACAGGAGATGGATTTGATTAA 2847 0.4166 MIEYKGEFEESVVSLLLLLLFWVAVIFISLVFGMSRNDGKKQQHLLHGGDFAGSGNGSGGRTTTSSNNNGFIPSSFRALSSYLRIVSSGASTVARSAAASVASSIKDREGDADRDQVIWAGFDKLEGEGEVIRQVLLLGYQSGFQVWDVDDSNDVSNLVSRHDDPVSFMQMVPSPIISKKPEDKFADRRPLLVVCTDGFFAGRSNVQDGLTTPTNEATLNCHDQVNGNHLPTTVQFYSMSSKSYAHVLKFRSAVFSVRCSSRIVAVSQTTQIHCFDVTTLERQYTLLTNPVVISCPGSGAIGYGPLAVGPRWLAYSGSLVAVATSGRVSPQHLTPSASFPGFSSNESLVVHYAKESSKHLAAGIVTLGDMGYKKLSRYCSELLPDSIGSLQSVNSGSKGNGVVNGHSTDVDNTGMVIVRDIVSKNVVAQFRAHESPISALCFDPNGTMLVTASIQGHNINVFKIMPGYESLSASDAGPSHVHLYRLQRGFTNAVIQDISFSVDSKWIMISSSRGTSHLFAINPQGGSVNIQSYDSSFTGKNGGLGVMTNHPVQWPHSSALEISSQQSLCAAGPPITLSAVSRIRNGSNGWRGTVTGAAAAATGRMNSLSGAITSSFHNLKGSSALYVDGNFSKEKYHLLVFLPTGSMIQYALKTFNGQDSTVVSKLTPAYESTPQTDARVVVEAIQKWNISWRHSQKDREDTIDIYEENGISDSTKVYPEESKEDNIINPNIKNVAIKSNSCSGKEQHFYISEAELQMHEAKTPLWAKTEIYFHSMGKEATIMMDEEAASGGEMEIEKIPTCMIEARSKDLVPIFDYIQTPKFQQMRTPAVDNKLNQQLLHQSSKLFEKGRISPKSILGSPECITNSGGPNAEFKNGIEGNEWDDHLILAETKGFVNNSDTLKPNTRHEFVNNRRELLNMEAQHMFVNSDRDGMKMENPYEETGDGFD* 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01654 948 PANTHER BREAST CARCINOMA AMPLIFIED SEQUENCE 3 63 896 IPR045142 GO:0006914
Rops3g01654 948 FunFam Breast carcinoma-amplified sequence 3 342 572 - -
Rops3g01654 948 Pfam Breast carcinoma amplified sequence 3 572 813 IPR022175 -
Rops3g01654 948 Gene3D - 133 541 IPR015943 GO:0005515
Rops3g01654 948 SUPERFAMILY WD40 repeat-like 136 522 IPR036322 GO:0005515
Rops3g01654 948 SMART WD40_4 423 463 IPR001680 GO:0005515
Rops3g01654 948 SMART WD40_4 479 520 IPR001680 GO:0005515
Rops3g01654 948 SMART WD40_4 241 276 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01654 Rops-Chr3 25873119 25880903 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01654 - - gmx:100778343 1285.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g01654 3 25873119 25880903 Rops3g01654 3 25873119 25880903 ECH
Rops7g01156 7 15489073 15495468 Rops3g01654 3 25873119 25880903 PCT