Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01381 ATGGAACCAGTTCTCAGCTACAAAAATGGCAACAGCAGCAATGGCAATGTCAACACTGACTATGATATCATTAGTTGGTTTGAAGATGTATCCAAGAACTCAGGATCTGTTCAGACTCAAACACTATGCAATATTCTGAAGCAGAACTATGGTGTTGAATATCTCAAGAAATGGTTGGGGAACTACAATATCCTTGAGATGGAAGCATGTGCATTGGAATCCCTTTTCACTTCTGTGGTTCCCCTTTCTTCACATGCTGATTTTGAGCCATTTATCCAAAGGATTGCAGATGGGGACAATGCTCCTTTACTCACTCAACAACCCATAACCACTCTTTCCTTAAGTTCTGGAACCACAGAGGGAAGGCAGAAGTTTGTGCCTTTTACTCGCCATAGTGCACAAACCACACTTCAAATACTCACTTTATCATCAGCCTATAGATCAAGGGTTTACCCCATAAGGGAAGGAGGAAAGATTCTTGAATTCATATACGGTAGCAATATGTTCAAAACAAAAGGAGGTTTAACAGTAGGAACAGCCACAACACACTGTTATGCAAGTGAAGAATTTAAAATGAAAAAGAAAAAAACAAAGTCATTTAGTTGCAGTCCTGAAGAAGTAATTTTTGGTGGAGACTATAAACAATCCACATACTGCCACCTCCTTCTTGGCCTCTTCTTCTCAGATCAAGTTGAGTTCATCACCTCAGCTTTTGTCTATAGCATGGTGCAAGCTTTCAGCAGTTTTGAAGAACTTTGGAGAGAATTATGCAATGACATTAGAAATGGCACTTTGAGTTCAAGAATCAATTCACCTAAAATGAGAGGGGCTGTTTTGGACATCATATCTCCAAACCCAAGTTTGGCTTCAAAATTAGAAGCTGCTTGTAAGGAGCTAGAAGTGGTGGATTGGTTTGGTTTGGTTCCAAAGCTTTGGCCTAATGCTAAGTACTTATATTCCATAATGACAGGATCTATGCAACCATACTTGAAAAAACTTAGGCATTATGCAAATGGGTTGCCTTTAGTTAGTGCTGATTATGGTTCAACTGAGAGCTGGATAGGGGTTAATGTGGATCCAAGTTTACCTCCAGAGAATGTGACATTTGCTGTTGTGCCCACTTTCTCTTACTTTGAGTTCATACCACTTCATAGACATAAACAGGATAGCAGTTCAGTTGCTGATGATTTCATTGAAGATAAGGCAATTCCACTAGCCCAAATTGAAGTTGGACAGCAATATGAAATAGTCCTCACCACTTTCACAGGACTGTACAGGTGCAGGTTAGGAGATGTGGTGGAAGTGGCTGGCTTTCACAATAGGACCCCGAAATTGAATTTTGTATGCAGAAGAAAGCTCATTCTGACAATAAATATAGACAAGAATACAGAGAAGGACCTTCAACTAGTGGTAGAGAGAGGGTCTCAGCTTCTGAATAAGGCAAAAGGTGAACTTGTTGATTTCACTAGCTATGCAGATGTCACAAACCAACCTGGGCACTATGTAATTTACTGGGAGGTCAAAGGAGAAGTAGAGGACAAGGTGCTTGATGAGTGTTGCAGAGAAATGGACAAATCTTTTGTTGATCATGGCTATGTGGTGTCCAGAAAAACCAATTCAATAGGGCCCCTTGAACTTTGCATTGTGGAGAGAGGGACTTTCAAGAAGATTTTGGACAAGTTCATAGCAAATGGGGCAGCATTGAACCAATTCAAGACACCTAGGTGCACAAATAACCATGTCCTCCTCAAAATTCTTGACTCTTGCACCATTAGAAGGTTTCTTAGCACAGCTTACAATTCAAATTAA 1809 0.4024 MEPVLSYKNGNSSNGNVNTDYDIISWFEDVSKNSGSVQTQTLCNILKQNYGVEYLKKWLGNYNILEMEACALESLFTSVVPLSSHADFEPFIQRIADGDNAPLLTQQPITTLSLSSGTTEGRQKFVPFTRHSAQTTLQILTLSSAYRSRVYPIREGGKILEFIYGSNMFKTKGGLTVGTATTHCYASEEFKMKKKKTKSFSCSPEEVIFGGDYKQSTYCHLLLGLFFSDQVEFITSAFVYSMVQAFSSFEELWRELCNDIRNGTLSSRINSPKMRGAVLDIISPNPSLASKLEAACKELEVVDWFGLVPKLWPNAKYLYSIMTGSMQPYLKKLRHYANGLPLVSADYGSTESWIGVNVDPSLPPENVTFAVVPTFSYFEFIPLHRHKQDSSSVADDFIEDKAIPLAQIEVGQQYEIVLTTFTGLYRCRLGDVVEVAGFHNRTPKLNFVCRRKLILTINIDKNTEKDLQLVVERGSQLLNKAKGELVDFTSYADVTNQPGHYVIYWEVKGEVEDKVLDECCREMDKSFVDHGYVVSRKTNSIGPLELCIVERGTFKKILDKFIANGAALNQFKTPRCTNNHVLLKILDSCTIRRFLSTAYNSN* 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01381 602 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 23 599 IPR004993 -
Rops3g01381 602 Pfam GH3 auxin-responsive promoter 26 579 IPR004993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01381 Rops-Chr3 20389490 20394955 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01381 22 597 EF-hand Containing Proteins AT1G23160 35.871 7.03e-122 370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01381 K14487 - gmx:100792358 1045.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g01381 3 20389490 20394955 Rops3g01381 3 20389490 20394955 ECH
Rops7g00967 7 12815863 12817425 Rops3g01381 3 20389490 20394955 PCT