Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01370 ATGAAGCTGAATAGGGGTTGGAGTATGAGGCGAAGAGCCTCGGATTTTCGAAGGCGAGTGAGGAGGAGGGTTCAGGATGTGGCGTGTTGTGCATTGTGTAGCGTAATGGTTGTTTTCTTTATTTATATTCTCATCAAAGGGAGCAACATTGAGTCCACCACACCCCATTTCTCAAGGAGAACTTTCAAGCATGATAAGGTTTTAGAAGGCTTTAACATTACTGAAGAGATGTTAAGCCCTACCTCAGTGGCCAGACAACTGAATGATCAGATATACCTAGCAAAAGCTTATGTTGTAATTGCCAAAGAAAGTAATAATCTCCAATTTGCTTGGGAATTAAGTTCCCAGATCCGCATTTCACATATTTTCCTCTCAAAAGCTGCCACTGGGCGTGCTCCTTTAACTATCAAGGAATCAGAAGATGCTATTCATGGTATGGCATTATTGCTATATCAGGCCCAGCAGCTCCATTATGACATTGCAGCCATGATCATGAGATATAAAGCGAAAATTCAAGCTCTTGAAGAACAGATGAATTCTGTAAATGAAAGGAGTTCAAAATATGGACAAATAGCTGCTGAAGAAGTGCCAAAGAGCCTATACTGCCTTGGTGTCCAGTTGACATCTAAATGGTTCAAAAATCATAGCTTGCAAAAGAAATTGAAGAACAAAAGTCAAGTGGAGATAATGAAGCTTAAGAACAATGATCTTTACCACTTTTGTGTGTTCTCTGATAATATTCTTGCTACTTCAGTTGCGATTAATTCAACTGCAATAAATTCTAAAAATCCAGATAAGATTGTTTTCCACCTTGTCACTGATGAGATAAGTTATGCTGCAATGAAGGCATGGTTTTCCATAAACGATTACCGAGGGGTGACAGTTCAAGTTCAAAAGTTTGAAGACTTCAGTTGGTTAAATGCTTCATATGTTCCTGTGCTTAAGCAACTTCAAGACTCAGAGATACAGAAGTACTACTTTAAAGGCAACAGTGATGATAGCAAGACCCCCATCAAGTTTCGAAATCCTAAATATCTATCCATGCTTAACCACCTGAGATTCTATATCCCTGAAGTTTTTCCTGCACTGAAGAAGGTGGTGTTCCTGGATGATGATGTTGTGGTTCAGAAGGATCTTTCTGATCTTTTTTCCATTGATTTGAATGGTAATGTCAATGGAGCTGTTGAGACATGCATGGAGACATTTCATAGATACCATAAGTATTTGAATTACTCACATCCTCTTATAAGAGCACATTTTGATCCTGATGCTTGTGGATGGGCATTTGGGATGAATGTATTTGATTTGGTTCAATGGAGGAATAGGAATGTAACTGGCATCTACCACTATTGGCAGGAAAAGAATGCAGACAGAACATTGTGGAAACTTGGCACCTTGCCACCTGGGTTGTTGACATTTTATGGATTAACTGAGGCATTGGATCCATCATGGCATGTATTGGGTTTTGGCTACACAAGTATTGATCCTAAGATGATAGAAAACGGGGCTGTATTGCACTTCAATGGGAACTCCAAACCATGGTTGAAGATTGGGATGGAAAAGTACAAGCCCTTGTGGGAAAAATATGTGGATTATTCTCACCCTTTGTTGCAACAGTGCAATTTTCATTGA 1632 0.394 MKLNRGWSMRRRASDFRRRVRRRVQDVACCALCSVMVVFFIYILIKGSNIESTTPHFSRRTFKHDKVLEGFNITEEMLSPTSVARQLNDQIYLAKAYVVIAKESNNLQFAWELSSQIRISHIFLSKAATGRAPLTIKESEDAIHGMALLLYQAQQLHYDIAAMIMRYKAKIQALEEQMNSVNERSSKYGQIAAEEVPKSLYCLGVQLTSKWFKNHSLQKKLKNKSQVEIMKLKNNDLYHFCVFSDNILATSVAINSTAINSKNPDKIVFHLVTDEISYAAMKAWFSINDYRGVTVQVQKFEDFSWLNASYVPVLKQLQDSEIQKYYFKGNSDDSKTPIKFRNPKYLSMLNHLRFYIPEVFPALKKVVFLDDDVVVQKDLSDLFSIDLNGNVNGAVETCMETFHRYHKYLNYSHPLIRAHFDPDACGWAFGMNVFDLVQWRNRNVTGIYHYWQEKNADRTLWKLGTLPPGLLTFYGLTEALDPSWHVLGFGYTSIDPKMIENGAVLHFNGNSKPWLKIGMEKYKPLWEKYVDYSHPLLQQCNFH* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01370 543 SUPERFAMILY Nucleotide-diphospho-sugar transferases 238 541 IPR029044 -
Rops3g01370 543 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 239 538 IPR029044 -
Rops3g01370 543 Coils Coil 164 184 - -
Rops3g01370 543 CDD GT8_like_1 238 531 - -
Rops3g01370 543 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 75 542 IPR029993 GO:0047262
Rops3g01370 543 Pfam Glycosyl transferase family 8 245 517 IPR002495 GO:0016757
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01370 Rops-Chr3 20201655 20204663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01370 9 543 Glycosyltransferase AT2G20810 75.651 0.0 828
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01370 K13648 - gmx:100792018 871.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g01370 3 20201655 20204663 Rops3g01370 3 20201655 20204663 ECH
Rops7g00952 7 12593040 12596714 Rops3g01370 3 20201655 20204663 PCT