Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01362 ATGGCTGCCGTTACTTCTTCTTTCTCTTTCTCAACGCTCACTAAATCTTCACAAAGGAAACTGACCCTCTCTTCTTCCACCCGCTTCCTCGCTTCCAATTCAGATGCCTTTCGCTTCAGCCTGAGTTTCTCGTGCCACTATGTTGGAGTTCGAGCTTCGAATTCCGCTTCCAAAATGGTCGTTCGGTGCTCCTCTTCCGTCACAGACCCTCCAACTGTTTCTGAGACGAAGTTAAATTTTCTCAAGGCATATAAGCGACCAATTCCTAGCATCTACAACTCAGTGCTGCAGGAGCTCATTGTCCAGCAACATTTGATGAGATACAAGAGGTCATACCGTTATGACCCTGTATTTGCTCTTGGCTTCGTCACTGTATATGAGCAGCTCATGGAAGGGTATCCTAGTGATGAGGATAGAAATGCTATCTTCCAAGCATACATTAAGGCATTGAATGAAGATCCAGAGCAATACAGAGTAGATGCACAGAAGTTGGAAGAGTGGGCTCGGACTCAAAACTCAACTTCTCTGGTTGAGTTTTCATCCAGAGAAGGAGAAGTTGAGGGGATATTAAAGGATATTGCAGAAAGAGCAGGAGGAAAGGGGGATTTCAGTTACAGTCGTTTCTTCGCAATAGGCCTTTTCCGTCTTCTTGAGTTGGCAAATGCAATGGAACCAGCAATTTTGGAAAAGCTTTGTACGGCATTGAATGTCAACAAAAGAAGTGTGGATCGGGACTTGGATGTGTACCGTAATCTGCTTTCTAAATTGGTTCAAGCTAAAGAGCTGCTAAAGGAATATGTAGACAGGGAGAAGAAGAAAAGAGAAGAAAGGGCGGAACCACAAAAGGCTAATGAGACCATTACAAAATGTTTGGGACAAGAGCAGTTTTCTACCCTGTAG 900 0.4411 MAAVTSSFSFSTLTKSSQRKLTLSSSTRFLASNSDAFRFSLSFSCHYVGVRASNSASKMVVRCSSSVTDPPTVSETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRSYRYDPVFALGFVTVYEQLMEGYPSDEDRNAIFQAYIKALNEDPEQYRVDAQKLEEWARTQNSTSLVEFSSREGEVEGILKDIAERAGGKGDFSYSRFFAIGLFRLLELANAMEPAILEKLCTALNVNKRSVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKREERAEPQKANETITKCLGQEQFSTL* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01362 299 NCBIfam photosystem II biogenesis protein Psp29 68 274 IPR017499 GO:0010207|GO:0015979
Rops3g01362 299 Pfam Thylakoid formation protein 72 277 IPR017499 GO:0010207|GO:0015979
Rops3g01362 299 Coils Coil 249 279 - -
Rops3g01362 299 Hamap Protein Thf1 [thf1]. 67 275 IPR017499 GO:0010207|GO:0015979
Rops3g01362 299 PANTHER PROTEIN THYLAKOID FORMATION 1, CHLOROPLASTIC 1 296 IPR017499 GO:0010207|GO:0015979
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01362 Rops-Chr3 20073847 20077880 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01362 - - aip:107632658 489.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g01362 3 20073847 20077880 Rops3g01362 3 20073847 20077880 ECH
Rops7g00930 7 12431709 12434579 Rops3g01362 3 20073847 20077880 PCT