Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01307 ATGGTCAAGGACAACAATGAGAAAGCACTAAAATACATTGAGGATGTTACCAGCAACGCTGGTGAAATTCAAGAGAGTGTCCTTACAGAGATCCTTTCCTCTAATGCCCATGTTGAGTACCTGCAACGCCATGGCTTAGATGGGCGCACAGACAAAGACACTTTCAAAAAGGTCATGCCTGTGGTGACTTATGAGGATTTGAAACCTGATATTGATCGTATAGCTAATGGTGATACCTCCCCAATTTTATGTTCCAAACCCATATCGGAGTTCCTCACTAGTTCTGGAACATCTGGTGGGGAGAGAAAATTGATGCCAACCATAGAAGATGATCTTGAACGAAGGTCATTACTTTATAGCCTTTTGTTGCCCGTGATGGACCAATTTGTACCCGGTTTAGAAAAAGGTAAAGGGATGTACTTTTTGTTCATAAAATCAGAAACCAAGACCCCTGGTGGACTACCTGCTCGTCCAGTTTTAACCAGTTATTACAAGAGCTCACACTTTAAGGACAGGACACATGGAAATGATCCTTATACAAACTACACTAGCCCCATTGAGACCATTCTCTGCATAGATTCTTATCAAAGCATGTATTCTCAAATGCTTTGTGGGCTTTGTCAAAATGAGCAAGTTCTTCGAGTTGGGGCTGTTTTTGCTTCTGGTTTCATCCGTGCCATTAAATTCCTTGAAAAGCATTGGGAATCTTTGTGTAATGACATAAGAACAGGTACCATAGATGCTGAAATCACTGACCCATTAGTGAGAGAGGCTGTTATGAAAATACTCAAACCAAATCCCAAGCTTGCAGCTTTCATAGAAGAGGAATGCAAGAGGGAGTCATGGAAAGGGATCATTACAAGGTTATGGCCCAACACCAAGTATGTTGATGTTATTGTCACTGGGACCATGTCTCAGTACATTCCAATATTGGATTATTATAGCAATGGTCTCCCACTTGTTTGCACCATGTATGCTTCATCTGAGTGTTATTTTGGCCTCAACTTAAACCCTTTATCTCAACCAAGTGAGGTATCTTACACTCTCATTCCCACCATGGCCTACTTTGAGTTCTTGCCCCTCAACAAGATTAGTGGACATACTAATTCAATTTCTCACCAAGAGCAAGAACATTTAGTTGATCTTGTAGACGTGGAATTGGGTCAAGAATATGAGCTTGTGGTCACCACTTATGCAGGCCTTTATAGGTATCGGGTGGGTGACATCCTCCGTGTAGCAGGATTCAAGAACAAGGCACCTCAATTCAACTTTGTATGCAGAAAGAACGTGGTTCTGAGCATTGATTCTGATAAAACCGATGAAGTTGAGCTACAAAATGCTGTGAAGAACGGAGCAAACCATCTTGCACAATTTGGTGCATCACTCACAGAATACACAAGCTATGCTGACACGTCCACTATCCCTGGCCACTACGTATTGTACTGGGAAATTAACATGAACAAGCAAAACCCAATTCCTGCTTCTGTTTTTGAGGAATGTTGCTTTGCAATTGAAGAATCTCTCAACAGTGTGTATCGCCAAGGCAGGGCATTAGACTCCATTGGGCCATTGGAAATCAAGATAGTGGAGGATGGGACATTTGACAAGCTCATGGATTTTGCTCTGAGTCAGTGTGCATCTATAAATCAGTACAAGACACCTCGTTGTGTAAAACATGGTCCCATTGTAGAGCTTCTAAACTCTAAGGTAGTTTCCAATTACTTCAGTCCAAAATGTCCACAATGA 1746 0.4175 MVKDNNEKALKYIEDVTSNAGEIQESVLTEILSSNAHVEYLQRHGLDGRTDKDTFKKVMPVVTYEDLKPDIDRIANGDTSPILCSKPISEFLTSSGTSGGERKLMPTIEDDLERRSLLYSLLLPVMDQFVPGLEKGKGMYFLFIKSETKTPGGLPARPVLTSYYKSSHFKDRTHGNDPYTNYTSPIETILCIDSYQSMYSQMLCGLCQNEQVLRVGAVFASGFIRAIKFLEKHWESLCNDIRTGTIDAEITDPLVREAVMKILKPNPKLAAFIEEECKRESWKGIITRLWPNTKYVDVIVTGTMSQYIPILDYYSNGLPLVCTMYASSECYFGLNLNPLSQPSEVSYTLIPTMAYFEFLPLNKISGHTNSISHQEQEHLVDLVDVELGQEYELVVTTYAGLYRYRVGDILRVAGFKNKAPQFNFVCRKNVVLSIDSDKTDEVELQNAVKNGANHLAQFGASLTEYTSYADTSTIPGHYVLYWEINMNKQNPIPASVFEECCFAIEESLNSVYRQGRALDSIGPLEIKIVEDGTFDKLMDFALSQCASINQYKTPRCVKHGPIVELLNSKVVSNYFSPKCPQ* 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01307 581 Pfam GH3 auxin-responsive promoter 13 559 IPR004993 -
Rops3g01307 581 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 5 579 IPR004993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01307 Rops-Chr3 18817065 18820554 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01307 1 576 EF-hand Containing Proteins AT1G23160 50.764 0.0 572
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01307 K14487 - gmx:100783196 1023.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g01307 3 18817065 18820554 Rops3g01307 3 18817065 18820554 ECH
Rops7g00901 7 12007195 12009544 Rops3g01307 3 18817065 18820554 PCT