Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01214 ATGGCCAACCTAAACTCTCTTCCCCTCTATGAAAAGAGTTGGTACAAGTATAATTATAAAAGGGTAACGGATAGCTTGATTTTAATCCTCCTCTTGTTGTTGCTTGGTTACCGTGTTATCTCTGTCAACAACTACTCTTTCCCTTGGTTTATTGCCTTGATATGCGAATCATGGTTCACCATCTCTTGGATTTTCATCGTCTCCACTCAATGGAATCCAGCAGTAATCAAAACCTACCCAGATCGTCTCTTGCAAAGGGTACAAGAGCTTCCGCCAGTGGATTTGTTTGTGACAACAGCAGACGTTGAGCTTGAACCTCCCATCATCACAGTGAACACTGTGCTGTCTCTTTTGGCACTTGATTACCCATCTCACAAGCTAGCTTGTTATGTTTCCGATGATGGGTGTTCCCCTCTTACCTTCTACGCTCTTAAAGAAGCCTCAAAATTTGGCAAACTTTGGGTACCTTTCTGTAAGAAGTACCACGTGCAAGTTAGAGCTCCATTCAGATACTTGTGTGATGAAAGCATGACCAACAATGAGGACTCAACACCAGAATTCAGACAAGAATGGTTACGTATGAAGGATATGTATGACAATCTCAGCCGCAAAATCGAAGAAGCGGCTAGAAAACCAATTTCATGCCAACTTGAGGGAGAATTTGCGGTTTTCTCCAACACTAACCGGACAAATCATCCAACCATAATCCGGGTTATATGGGAGAACAAGGAAAGCCTTGCAGATGGATTGCCACATTTGATCTACATATCTAGAGAGAAGAGGCCAAAGCAACCACATCATTTCAAAGCCGGTGCCATGAATGTGTTGACAAGAGTATCCGGGTTGATTACCAATGCTCCATTTTTGCTGAACGTCGATTGTGACATGTTTGTAAACAATCCAAAGATTGTTTTGCATGCGATGTGCATTTTGCTTGATTCCAAGGGAGAAAAAGAAGCTGCATTTGTTCAATGTCCCCAACAATTTTATGCTGCACTTAAGGACGATCCTTATGGAAATCAGATGGTGATTTTGTTTAAGTACTTGGGGGCTGGATTTGCGGGACTTCAAGGACCTGTCTACGGGGGAACAAACTGCTTGCATAGAAGAAAAGTTATTTATGGTCTTTCTCCGGATAACATAGAAAAGGGAAATAGCATATCAGAGGAGGAGTTAAAACAAAAATTTGGAGCTTCAAAGGAGCTTATAAAATCAGTTGTTCATGCTTTGGATGGGAGGACATATTCGCCAAATGACATTGATGTTTTGAAAGCTGTTGATGTAGCAAGTCAATTTGCTGATTATGGATATGAATATGGCACTGGCTGGGGTGAACAGGTGGGTTGGATGTATGGATCAATAACAGAGGATGTACTGACTGGGTTGACAATACATGAGAAAGGTTGGAGATCAGAGATGTGTACACCAGACCCAATTGCCTTCACAGGTTGTGCTCCAGTTGGTGGGCCAACTTCAATGGCTCAATATAAAAGATGGGCCACAGGAGTGCTTGAGATTTTCTTTTCCAAGCACTGTCCTATTTTTGGGACCCTTTTCAGTAAGCTTTCTTTGAGGCAGTGCTTGGCTTATATGTTGATTATCAACTGGGGGTTGTGGCCAGTTGCTGAAGTATGCTATGCATGCCTCCTTGCATATTGCATCATTACCAACTCCTATTTCTTGCCCCAGGTCCACGTGGACAAACCCATTACCGCCGGAGAAACGCATTACCACCGGAGAAAGCTCGGGTCTTTGGCACTGACATTCCCTCTTGTGTTGGTCAACATGGCTACAAAGAACAAAAGATTTAGAGGTGCGGACAAACGTAAGCCCACAACCAAAGAAGATACTACTGAGAAGAGTCATGGGAAAGACAAATCCGTTGAACGAGAGGTTTCACCAACAATAAAGTTTGAGAAAAGTCCAGCTGGCAAGACAATGCTAGAGATGATGGCTGCTCGTCTATCACCAGAGGCTTATCAGGAGATGGTGCAAGTCGTTTCTGTCATGGGTACAAAGAACAAAAGATGTAGAAGTGCTGACAAACGTGAACCAACAACCAAAGAAGATACAACTGACAAGTGCGATGGAAAGCACACATCTGTTGAACGAGATGGATCATCAACAAAAAAGGTTAGTTTGTATTAA 2148 0.4278 MANLNSLPLYEKSWYKYNYKRVTDSLILILLLLLLGYRVISVNNYSFPWFIALICESWFTISWIFIVSTQWNPAVIKTYPDRLLQRVQELPPVDLFVTTADVELEPPIITVNTVLSLLALDYPSHKLACYVSDDGCSPLTFYALKEASKFGKLWVPFCKKYHVQVRAPFRYLCDESMTNNEDSTPEFRQEWLRMKDMYDNLSRKIEEAARKPISCQLEGEFAVFSNTNRTNHPTIIRVIWENKESLADGLPHLIYISREKRPKQPHHFKAGAMNVLTRVSGLITNAPFLLNVDCDMFVNNPKIVLHAMCILLDSKGEKEAAFVQCPQQFYAALKDDPYGNQMVILFKYLGAGFAGLQGPVYGGTNCLHRRKVIYGLSPDNIEKGNSISEEELKQKFGASKELIKSVVHALDGRTYSPNDIDVLKAVDVASQFADYGYEYGTGWGEQVGWMYGSITEDVLTGLTIHEKGWRSEMCTPDPIAFTGCAPVGGPTSMAQYKRWATGVLEIFFSKHCPIFGTLFSKLSLRQCLAYMLIINWGLWPVAEVCYACLLAYCIITNSYFLPQVHVDKPITAGETHYHRRKLGSLALTFPLVLVNMATKNKRFRGADKRKPTTKEDTTEKSHGKDKSVEREVSPTIKFEKSPAGKTMLEMMAARLSPEAYQEMVQVVSVMGTKNKRCRSADKREPTTKEDTTDKCDGKHTSVERDGSSTKKVSLY* 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01214 715 MobiDBLite consensus disorder prediction 608 634 - -
Rops3g01214 715 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 222 381 IPR029044 -
Rops3g01214 715 MobiDBLite consensus disorder prediction 675 706 - -
Rops3g01214 715 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 16 564 - -
Rops3g01214 715 FunFam Cellulose synthase-like protein H1 223 382 - -
Rops3g01214 715 MobiDBLite consensus disorder prediction 603 634 - -
Rops3g01214 715 SUPERFAMILY Nucleotide-diphospho-sugar transferases 110 510 IPR029044 -
Rops3g01214 715 MobiDBLite consensus disorder prediction 671 715 - -
Rops3g01214 715 Pfam Cellulose synthase 93 383 IPR005150 GO:0016020|GO:0016760|GO:0030244
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01214 Rops-Chr3 17190811 17205954 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01214 8 563 Glycosyltransferase AT2G32530 47.452 0.0 550
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01214 - - gmx:100500469 927.932
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g01214 3 17190811 17205954 Rops3g01214 3 17190811 17205954 ECH
Rops7g00839 7 11195412 11199237 Rops3g01214 3 17190811 17205954 PCT