Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01170 ATGTCCACAAAGGATTGCGGCCACCACCACTACAAGCGCCGTAAGCTCCTCAGCCACATACTCGCCGGCGTGGTGGCCTTCATAGTCCTAATCCTCCTCATCATTTTCTTAATATGGATCATCCTAAGACCCACCAAACCACGTTTCATCCTCCAAGACGCCACCGTTTTCGCCTTCAACCTCTCTTCAACAGAACCCTCTTATTCTTTTTCTTCTCCCACACCTAACACTCTCACCACAACCATGCAAGTTACCCTCTCTTCTCACAACCCTAACAACCGCATAGGCATTTATTATCAAAAGCTTCATGTCTATGCTTCTTACCGGAGCCAACAGATCTCACTCTCCACGGTGGTTCCCGAAACCTACCAGGGCCACAAGGACTACACCATTTGGTCGCCGTTTCTCTACGGCACGGCGGTTCCGGTGTCGCCGTACACGTTGAGTTCTTTACAACAGGATCAGAATTTTGGGGTGGTTTTGGTCAACATAAAGGTCAACGGAAGGGTGAAATGGAAGGTAGGGACTTGGATCTCAGGAAGGTATCATATTTATGTGAATTGTCCGGCGTATGTTAGGTTCTCCGGTGATCGGAATAATGAGGTCGGTGTTGTTGCTCCGGCGGTGAAGTTTCAGCTTATGCAAAGTTGCAGTGTTGATGTTTAG 666 0.485 MSTKDCGHHHYKRRKLLSHILAGVVAFIVLILLIIFLIWIILRPTKPRFILQDATVFAFNLSSTEPSYSFSSPTPNTLTTTMQVTLSSHNPNNRIGIYYQKLHVYASYRSQQISLSTVVPETYQGHKDYTIWSPFLYGTAVPVSPYTLSSLQQDQNFGVVLVNIKVNGRVKWKVGTWISGRYHIYVNCPAYVRFSGDRNNEVGVVAPAVKFQLMQSCSVDV* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01170 221 PANTHER OS05G0367900 PROTEIN 20 219 IPR044839 GO:0098542
Rops3g01170 221 Pfam Late embryogenesis abundant protein 85 188 IPR004864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01170 Rops-Chr3 16464830 16465727 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01170 14 188 EF-hand Containing Proteins AT5G21130 21.714 5.01e-09 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01170 - - pvu:PHAVU_005G120900g 310.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00513 7 6599473 6600363 Rops3g01170 3 16464830 16465727 PCT