Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01036 ATGGCTTCTTCTACTCGAGTAGATCTCGATGGCAACCCCATTAAACCGATCACAATTTGCATGATCGGTGCTGGTGGGTTCATTGGGTCCCACCTTTGTGAGAAGCTCATGTCCGAAACCCATCACAAGGTTCTCGCCTTGGATGTCTACAATGACAAGATCAAACACCTTTTGGAACCCGACAATCTTCCTTGGGCTGGTCGAATCACTTTCCACCGCCTCAACATCAAACATGACTCTAGGCTTGAAGGTCTCATCAAGATGGCAGATCTGACTATAAATCTGGCTGCAATTTGTACACCAGCGGATTATAACACACGTCCCCTTGACACCATTTACAGCAATTTCATTGATGCACTTCCAGTGGTGAAGTATTGTTCTGAAAATAACAAGAGGCTCATTCATTTCTCCACTTGTGAAGTGTATGGTAAAACTATTGGAAGTTTTCTCCCTAAAGATAGTCCTCTTCGTCAGGATCCCTCATACTATGTTCTTAAAGAAGATGAGTCTCCATGCATTTTTGGTCCAATTGAAAAGCAGAGATGGTCATATGCTTGTGCAAAGCAGTTGGTTGAGAGGCTGATTTATGCTGAGGGTGCTGAAAATGGCTTGGAGTTCACAATTGTGAGGCCTTTCAACTGGATTGGACCTAGAATGGATTTCATTCCTGGCATTGATGGTCCAAGTGAGGGTGTTCCTCGGGTTTTGGCATGCTTTAGCAATAATCTTCTCAGAGGAGAGCCCCTCAAACTTGTGGACGGTGGCCAATCTCAAAGAACCTTTGTCTACATTAAAGATGCTATTGAAGCTGTCTTATTGATGATTGAAAACCCTGCCAGGGCCAATGGACAAATCTTTAATGTGGGTAACCCAAACAATGAGGTTACAGTTAGGCAGCTTGCTGAAATAATGATTCAGGTTTACTCAAAGGTAAGCGGAGAACAACCTCCTGAAACACCTACAATTGATGTGAGCTCAAAAGAATTTTACGGTGAGGGATATGATGATAGTGACAAGAGAATCCCTGACATGACCATAATAAACAGGCAACTTGGATGGAATCCTAAGACTTCACTTTGGGACCTGCTTGAATCCACCCTGACCTATCAACACAGGACATATGCTGAAGCCATTAAGAAAGTCATTGCAAAACCAGTTGCAAGTTAA 1167 0.4319 MASSTRVDLDGNPIKPITICMIGAGGFIGSHLCEKLMSETHHKVLALDVYNDKIKHLLEPDNLPWAGRITFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPSYYVLKEDESPCIFGPIEKQRWSYACAKQLVERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRGEPLKLVDGGQSQRTFVYIKDAIEAVLLMIENPARANGQIFNVGNPNNEVTVRQLAEIMIQVYSKVSGEQPPETPTIDVSSKEFYGEGYDDSDKRIPDMTIINRQLGWNPKTSLWDLLESTLTYQHRTYAEAIKKVIAKPVAS* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01036 388 Gene3D - 17 379 - -
Rops3g01036 388 Pfam NAD dependent epimerase/dehydratase family 19 289 IPR001509 -
Rops3g01036 388 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 18 371 IPR036291 -
Rops3g01036 388 FunFam UDP-D-apiose/UDP-D-xylose synthase 2 17 380 - -
Rops3g01036 388 PANTHER BIFUNCTIONAL POLYMYXIN RESISTANCE PROTEIN ARNA 18 373 - -
Rops3g01036 388 CDD Arna_like_SDR_e 18 373 IPR045869 GO:0016831
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01036 Rops-Chr3 13561983 13565155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01036 17 383 Miscellaneous Gene Families AT1G02000 21.429 8.98e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01036 K12449 - gmx:102667779 754.207
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00601 7 7696882 7704859 Rops3g01036 3 13561983 13565155 PCT