Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00947 ATGCTGAGTCGTAAACGACTTGTCGTTTCGCTCTTTCTCACCACTATCTTCCTCTCTTCCCTCTCTCTCACTCTTTGCAACAAAACCCCCCAAAACGACGACGTCGACGATGAAGATCTCAGCTTCCTTGAGGAACCAGATGACACCACCTCCACTTCGCACCACGCCCACGGCAACTACCCAGATCCCGATCAGTTTGGCGACGACGAAGACGATGACGACGGCGACTTCTCCGGCTTCGACCCCTCGTCGGAGGAACAGTACAACGAACCCGAGGTGGATGACAAAGACGTCGTCGTTTTGAAGGAACGGAACTTCACCACCGTCATTGAGAACAACCAGTTCGTGATGGTGGAGTTCTATGCTCCCTGGTGCGGTCACTGCCAGGCACTGGCGCCGGAGTATGCAGCTGCCGCCACCGAGTTGAAGAACGACGGTGTCGTTTTGGCCAAGGTAGATGCCACTCAGGAGCATGAATTGGCACATGAGTACGATGTGCAGGGCTTCCCCACCGTGTACTTCTTCATCGATGGTGTTCATAAACCTTACACTGGCCACAGAACCAAAGATGCTATAGTGACGTGGATTAGGAAGAAGATAGGACCCGGTGTGTACAACATAACTTCTTTGGATGATGCTGAACGCATATTGACCTCTGAATCTAAAGTGGTTTTGGGCTTCCTTGACTCTCTAGTTGGTGCTGAGAGTGACGAGCTAGCTGCAGCATCAAAACATGAGGACGGTGTCAGCTTTTATCAAACCGTGATTCCTAATGTGGCTAAGCTTTTCCATATTGACCCAAATGTTAAATGCCCCGCTTTGGTCTTGCTCAAGAAAGAGGAGGAGAAAGTGAACCATTTTGATGGCCAATTTGTAAAAGCTGCAATAGCTGACTTTGTATCCTCCAACAAACTTCCCTTGGTTACAACTTTTACTAGGGAAAGTGCCCCATCAATATTTGAAAGTCAAATCAAGAAACAGTTGTTGCTGTTTGTGACTTCAAATGATACAGAGAAGTTCATTCCTGTATTCCAAGAAGCAGCAAAGTTTTTCAAAGGGAAGCTGATCTTTGTTCATGTGGAATTGGATAATGAAGATGCCGGAAAGCCTGTTGCAGATTATTTTGGTATCACTGGGAGTGCTCCCAAAGTACTTGCATTCACAGGAAATGATGATGGCAGAAAATTTTTGCTTGACGGAGACGTGACTGTTGACAAAATTAAGGCATTTGGGGAGGATTTCCTTGAAGACAAGCTAAAACCTTTCCTCAAGTCAGATCCAGTTCCAGAAAGTAATGATGGTGATGTGAAAATAGTTGTTGGGGATAACTTCGATGAGATTGTCTTGGACGAGTCAAAGGATGTTCTACTTGAGATTTATGCTCCCTGGTGTGGCCACTGCCAAGCCCTGGAACCAACATACAAGAAGCTTGCAAAACATCTTCATGGCATCGAGTCTATTGTAATAGCCAAGATGGATGGAACAACAAATGAGCATCCCAGGGCAAAGGCTGATGGGTTCCCCACTCTCCTCTTCTACCCAGCAGGACAAAAGAGTTCTGACCCTATTACTGTTGATGCGGATCATACAGTGGTGGCCTTTTACAAGTTTGTTAAGAAACACGCATCAATCCCATTCCAACTCCAGAAACCAACCTCAACTTCTAAAACTGAGAGCGAGAGTTCTGATGTCAAGGAGAGTCAGAGTAGCAGCACCAACGTGAAGGATGAATTATGA 1737 0.464 MLSRKRLVVSLFLTTIFLSSLSLTLCNKTPQNDDVDDEDLSFLEEPDDTTSTSHHAHGNYPDPDQFGDDEDDDDGDFSGFDPSSEEQYNEPEVDDKDVVVLKERNFTTVIENNQFVMVEFYAPWCGHCQALAPEYAAAATELKNDGVVLAKVDATQEHELAHEYDVQGFPTVYFFIDGVHKPYTGHRTKDAIVTWIRKKIGPGVYNITSLDDAERILTSESKVVLGFLDSLVGAESDELAAASKHEDGVSFYQTVIPNVAKLFHIDPNVKCPALVLLKKEEEKVNHFDGQFVKAAIADFVSSNKLPLVTTFTRESAPSIFESQIKKQLLLFVTSNDTEKFIPVFQEAAKFFKGKLIFVHVELDNEDAGKPVADYFGITGSAPKVLAFTGNDDGRKFLLDGDVTVDKIKAFGEDFLEDKLKPFLKSDPVPESNDGDVKIVVGDNFDEIVLDESKDVLLEIYAPWCGHCQALEPTYKKLAKHLHGIESIVIAKMDGTTNEHPRAKADGFPTLLFYPAGQKSSDPITVDADHTVVAFYKFVKKHASIPFQLQKPTSTSKTESESSDVKESQSSSTNVKDEL* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00947 578 FunFam Protein disulfide-isomerase 87 199 - -
Rops3g00947 578 Pfam Thioredoxin 98 198 IPR013766 -
Rops3g00947 578 Pfam Thioredoxin 436 521 IPR013766 -
Rops3g00947 578 NCBIfam protein disulfide-isomerase 96 577 IPR005792 GO:0003756
Rops3g00947 578 FunFam protein disulfide-isomerase A2 200 304 - -
Rops3g00947 578 FunFam Protein disulfide-isomerase 431 544 - -
Rops3g00947 578 MobiDBLite consensus disorder prediction 548 569 - -
Rops3g00947 578 SUPERFAMILY Thioredoxin-like 205 315 IPR036249 -
Rops3g00947 578 SUPERFAMILY Thioredoxin-like 91 201 IPR036249 -
Rops3g00947 578 Gene3D Glutaredoxin 85 200 - -
Rops3g00947 578 CDD PDI_b'_family 315 415 - -
Rops3g00947 578 ProSiteProfiles Thioredoxin domain profile. 79 201 IPR013766 -
Rops3g00947 578 Gene3D Glutaredoxin 430 544 - -
Rops3g00947 578 MobiDBLite consensus disorder prediction 33 95 - -
Rops3g00947 578 SUPERFAMILY Thioredoxin-like 303 433 IPR036249 -
Rops3g00947 578 SUPERFAMILY Thioredoxin-like 432 543 IPR036249 -
Rops3g00947 578 PANTHER PROTEIN DISULFIDE ISOMERASE 17 560 - -
Rops3g00947 578 PRINTS Thioredoxin family signature 124 133 - -
Rops3g00947 578 PRINTS Thioredoxin family signature 165 176 - -
Rops3g00947 578 PRINTS Thioredoxin family signature 116 124 - -
Rops3g00947 578 ProSitePatterns Thioredoxin family active site. 117 135 IPR017937 -
Rops3g00947 578 CDD PDI_b_family 204 303 - -
Rops3g00947 578 ProSitePatterns Thioredoxin family active site. 456 474 IPR017937 -
Rops3g00947 578 MobiDBLite consensus disorder prediction 65 80 - -
Rops3g00947 578 MobiDBLite consensus disorder prediction 548 578 - -
Rops3g00947 578 ProSiteProfiles Thioredoxin domain profile. 422 543 IPR013766 -
Rops3g00947 578 Gene3D Glutaredoxin 305 429 - -
Rops3g00947 578 Pfam Thioredoxin-like domain 240 410 - -
Rops3g00947 578 FunFam Protein disulfide-isomerase 305 430 - -
Rops3g00947 578 CDD PDI_a_family 99 196 - -
Rops3g00947 578 NCBIfam protein disulfide-isomerase domain 102 199 IPR005788 GO:0003756
Rops3g00947 578 CDD PDI_a_PDI_a'_C 436 538 - -
Rops3g00947 578 Gene3D Glutaredoxin 201 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00947 Rops-Chr3 12040664 12045702 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00947 K09580 - gmx:100785630 921.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00686 7 9047552 9052035 Rops3g00947 3 12040664 12045702 PCT