Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00589 ATGGCGGTTCTTACACCTGTAAGTTCAAATTTTGGTGCAAAGTATCGTGCTCTAGCTCCATTGAGAGCTCTAAGGGGTTTGGTGTGTCTGCTGGTGCTGCTTTCAACAGCATTTGTAATGTTAGTGTTCTTTGGCTTTATTAGTGCTGTTATAGTGCGATTTTTTAGCATCACTTACAGCAGGAAAGCAACTTCTTTTTTCTTTGGTGCTTGGCTAACTTTGTGGCCCGTTCTATTTGAAAAAATCAACAAGACTAAAGTTGTGTTCTCTGGAGCTATTGTTCCTTCAAGAGAACGGATCTTATTGATTGCAAATCACAGAACTGAGGTTGATTGGATGTATTTATGGGACCTTGCCTTGCGGAAGGGATGCATTGGATACATAAAATATATACTTAAGAGCAGCTTGATGAGACTTCCAATTTTTGGTTGGGCATTTCACATACTGGAGTTCATCCCAGTGGAAAGGAAATGGGAGGCTGATGAGTCCACCATGCGCCATATGCTTTCTACATTCAAGGATCCCCAAGATCCTCTCTGGCTCGCTCTTTTTCCCGAAGGCACTGATTTTACTGAGCAGAAGTGCCTTCGGAGTCAAAAATATGCTGCTGAACATGAGTTACCGATTCTGAAAAATGTTTTACTTCCAAAGACCAAGGGCTTCTGCACCTGCTTGCAAGAGTTGAGGGGATCTCTTACTGCAGTTTATGATGTGACCATTGGCTACAAATACCGCTGCCCATCTTTCTTGGACAATGTCTTTGGGGTGGATCCTTCTGAAGTTCATATGCATATCTGCCGCATTCCCCTTGATCGTATCCCGGTATCTGAACATGAAATGTCCATGTGGTTGGTTGATAGATTCAAGTTAAAGGACCAGTTACTTTCCAATTTTCAAGTTCAAGGTCAGTTTCCTGATAAAGCAATAGAAAGGGACCTCCCTGCTGTGAAGAGCATTTTAGCTTTCTCTGCTTATTTGGTTCCTGCCACATATTTCAATATTCGGCCACAGCCCATTCTTGACTGTTTGAAGATGAGATCTCAAATTCTTGAATAG 1056 0.4214 MAVLTPVSSNFGAKYRALAPLRALRGLVCLLVLLSTAFVMLVFFGFISAVIVRFFSITYSRKATSFFFGAWLTLWPVLFEKINKTKVVFSGAIVPSRERILLIANHRTEVDWMYLWDLALRKGCIGYIKYILKSSLMRLPIFGWAFHILEFIPVERKWEADESTMRHMLSTFKDPQDPLWLALFPEGTDFTEQKCLRSQKYAAEHELPILKNVLLPKTKGFCTCLQELRGSLTAVYDVTIGYKYRCPSFLDNVFGVDPSEVHMHICRIPLDRIPVSEHEMSMWLVDRFKLKDQLLSNFQVQGQFPDKAIERDLPAVKSILAFSAYLVPATYFNIRPQPILDCLKMRSQILE* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00589 351 Pfam Acyltransferase 94 243 IPR002123 GO:0016746
Rops3g00589 351 SMART plsc_2 100 222 IPR002123 GO:0016746
Rops3g00589 351 CDD LPLAT_LCLAT1-like 78 265 - -
Rops3g00589 351 PANTHER 1-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE-RELATED 18 331 - -
Rops3g00589 351 Pfam Acyltransferase C-terminus 254 318 IPR032098 -
Rops3g00589 351 SUPERFAMILY Glycerol-3-phosphate (1)-acyltransferase 34 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00589 Rops-Chr3 7423447 7426983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00589 14 338 Miscellaneous Gene Families AT1G75020 59.490 6.62e-152 431
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00589 K13513 - gmx:100814885 585.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g00589 3 7423447 7426983 Rops3g00589 3 7423447 7426983 ECH
Rops3g00589 3 7423447 7426983 Rops2g04528 2 82687887 82704798 ECH