Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00530 ATGTGTGACACTATGTCCGTAACTCATTTGGATCGACCTGTTAAAGGTCTTGACATTGAATATTCAGAGGATGAAAAGAAAACAAAGCTTGGATCTTTAAAGAAAGTAGCAATCAGTGCATCTTCCAAGTTCAAACATTCCTTGACAAAGAAGGGGCGAAGACACAGCAGGGTTATGTCTGTTGCTATTGAGGATGAACTTGATGCAGAAGAGTTGCAGGCAGTTGATGCTTTTCGCCAAGCACTTATCTTGGAAGAGCTATTACCTGCAAAACATGATGATCATCATATGATGCTAAGATTCCTGAGGGCAAGGAAGTTTGACATTGAGAAAACAAAACAAATGTGGGCTGATATGCTCCAGTGGAGGAGGGAATTTGGTGCTGGCACCATCATGGAGGATTTTGAATTCAAGGAGATAGATGAAGTACTAAAATACTACCCACAAGGACATCATGGAGTCGATAAGGATGGACGACCTGTTTACATAGAAAGGTTGGGTCAAGTTGACTCTAACAAGCTGATGCAAGTGACTACTATGGATCGCTATCTTAAGTACCATGTAAGAGAGTTTGAGAGGACATTTGCTGTTAAGTTGCCTGCATGTTCAATCGTAGCAAAGAAGCACATTGACCAAAGCACTACTATCTTGGATGTGCAAGGAGTGGGCCTCAAAAGTATGAACAAAGCTGCAAGGGATCTCATCCAGAGGCTTCAGAAGATTGATGGTGACAACTATCCTGAGTCCCTGAACCGTATGTTCATCATCAATGCTGGTTCTGGATTCAGGCTATTGTGGAACACTGTTAAGTCATTCCTTGATCCCAAGACCACCTCAAAAATCCATGTCCTAGGTAACAAATACCAGAGCAAGTTACTTGAAATCATTGATGCCAGTGAACTTCCAGAGTTCTTGGGCGGTACTTGTACTTGTGCAGACAAAGGCGGTTGTATGCTTTCTGACAAGGGACCATGGAATGACCCAGAAATCTTGAAGATGGTTCAAAATGGTGAAGGAAAATGCCGAAGGAAAACCTTATCCAGGGTTGAGGAGAAAACAATCGTGGAAGATGAAACAGCATATCAAAAGGAAGGTGAGTCTTTCAACAAAGAATATGCTCCCAATGTGCAATTTTTACTGCCAAAAGTGGAGCATCCTGAATCCTGTGAAGTGGCAAAGCAGTGTAATGTGTATCAGTATGATGGCTTTGTCCCAGTGGTTGAGAAAACAGTCTCTTGGAAGAAATCTGTACAAAATGATCAATTGGCACTTCCTAAAGATTGTTTCCCTGACAATGCATGCAAGACTTCTACTGGGTTTAAAAATCAATTTACTGGTGGAATCATGGCCATTGTTATGGGAATTGTAACATTCGTCCGCTTGACAAAGAACATGCCAAGAAAAATATCTGAAGTTGCAACGTATGGTAGCTCAGTATATGATGATGGCAATATGATAAAAGCAGCTACCATTTCCATTGATGATCACATGGCTATGATGAAACGCATGGCTGATCTAGAAGAGAAGGTGAATGTCCTAAATATGAGACCTGCCATGCCACCTGAAAAGGAGGAAATGCTCAACAGTGCTCTAAACCGAGTCACTACCCTGGAACAAGAGTTGGCCACAGCAAAAAAGGCACTTGATGATGCCCTTGCTAGACAAGTGGAGCTCCAATGTGTTATTGACAAAAAGAAGAAGACGAAGAAGTTTTTCCATTGGTAA 1725 0.4174 MCDTMSVTHLDRPVKGLDIEYSEDEKKTKLGSLKKVAISASSKFKHSLTKKGRRHSRVMSVAIEDELDAEELQAVDAFRQALILEELLPAKHDDHHMMLRFLRARKFDIEKTKQMWADMLQWRREFGAGTIMEDFEFKEIDEVLKYYPQGHHGVDKDGRPVYIERLGQVDSNKLMQVTTMDRYLKYHVREFERTFAVKLPACSIVAKKHIDQSTTILDVQGVGLKSMNKAARDLIQRLQKIDGDNYPESLNRMFIINAGSGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDASELPEFLGGTCTCADKGGCMLSDKGPWNDPEILKMVQNGEGKCRRKTLSRVEEKTIVEDETAYQKEGESFNKEYAPNVQFLLPKVEHPESCEVAKQCNVYQYDGFVPVVEKTVSWKKSVQNDQLALPKDCFPDNACKTSTGFKNQFTGGIMAIVMGIVTFVRLTKNMPRKISEVATYGSSVYDDGNMIKAATISIDDHMAMMKRMADLEEKVNVLNMRPAMPPEKEEMLNSALNRVTTLEQELATAKKALDDALARQVELQCVIDKKKKTKKFFHW* 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00530 574 Coils Coil 527 554 - -
Rops3g00530 574 SUPERFAMILY CRAL/TRIO domain 139 335 IPR036865 -
Rops3g00530 574 FunFam SEC14 cytosolic factor 127 339 - -
Rops3g00530 574 Gene3D - 54 126 - -
Rops3g00530 574 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 139 313 IPR001251 -
Rops3g00530 574 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 18 566 - -
Rops3g00530 574 Gene3D - 127 339 IPR036865 -
Rops3g00530 574 Pfam CRAL/TRIO domain 145 307 IPR001251 -
Rops3g00530 574 Pfam CRAL/TRIO, N-terminal domain 91 118 IPR011074 -
Rops3g00530 574 SUPERFAMILY CRAL/TRIO N-terminal domain 65 135 IPR036273 -
Rops3g00530 574 SMART sec14_4 139 310 IPR001251 -
Rops3g00530 574 PRINTS Cellular retinaldehyde-binding protein signature 299 308 - -
Rops3g00530 574 PRINTS Cellular retinaldehyde-binding protein signature 266 285 - -
Rops3g00530 574 PRINTS Cellular retinaldehyde-binding protein signature 97 119 - -
Rops3g00530 574 CDD SEC14 140 308 IPR001251 -
Rops3g00530 574 SMART CRAL_TRIO_N_2 94 119 IPR011074 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00530 Rops-Chr3 6713169 6717811 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00530 73 304 Acyl Lipid Metabolism Gene Families AT5G47730 27.386 3.46e-19 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00530 K26544 - gmx:100802579 862.448
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g00530 3 6713169 6717811 Rops3g00530 3 6713169 6717811 ECH
Rops3g00530 3 6713169 6717811 Rops2g03324 2 61034066 61040701 ECH