Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g03324 ATGTCAGGACCACTGTCTCCCAGGCCAGCTCTTGACAAGAGTGACCGAGTGGGTTCTCTGAAGAAGAAGCTGAGGGATTCGTTGACAAGGAAGAATAGGAGAAGCAGCAGCAAGGTGATGTCGGTAGAAATCGAGGATTACCGTGATGCTGAGGAATCCAAAGCTGTTGATGAGTTCCGTCAGGCACTTGTGTTGGATGAGTTACTCCCTGAGAGGCACGATGATTATCATATGATTCTCAGATTCCTGAAGGCCAGGAAATTTGACGTCGAGAAATCAAAGCAAATGTGGTCTGACATGCTTCAGTGGAGGAAGGAATTTGGTGCTGACACCATCACTGAGGATTTTGAATTCAAGGAACTTGATGAAGTGCTGCAATATTATCCACACGGACATCATGGAGTAGATAAGGATGGACGACCAGTGTACATTGAGAGATTGGGCCAAGTAGATGCCACCAAGTTGATGCAAGTCACAACCATGGATCGCTATATCAAATACCATGTCAAGGAGTTTGAGAGGACATTTGATTTGAAGTTTGCAGCTTGTTCCATTGCTGCAAAGAAGCACATTGATCAAAGTACAACCATCCTAGATGTGCAAGGAGTGGGGCTTAAGAGCTTCAGCAAACACGCCAGAGAGCTCATCACGAGCCTTCAGAAGATTGACGGTGACAATTATCCTGAAACCTTGAACCGCATGTTCATCATCAATGCAGGTTCTGGATTCAGAATGTTGTGGAACACCGTAAAATCCTTCCTTGACCCAAAGACTACATCAAAAATCCATGTTCTTGGCAACAAGTACCAAAGCAAATTGCTTGAAATAATTGATGCAAGTGAATTGCCAGAGTTTTTGGGAGGTACTTGTACCTGTGCTGATCAAGGAGGCTGCATGCGTTCTGATAAGGGTCCATGGAAGGATGAAGAAATAGTGAGGATGGTTCAGAATGATGCACACAAATGCTCAAGGAAATGTGAGTCTCCTGTTGCGGACGAGAAGACAGTTCCTGAGGAACCCGAGGCTACCAAAAAGGAGGCACATCTCACCTCACAATTGTCTTCTGCCCTAGCTGAGGCCCCTCCTGCTAAAGCTTGCAACTACGAGGATTTTGTCCCTGCAGCTGATAAAAATGCTTGGAAAAAGGTAGAAGAAAATGAGAAATTTGCAGTATCAAAAGGTGGAAATGAAACTTTCGGCATGGCTGATTCATGCAAGATTCACGAAAAAGTGAACTCCCAAATTTTCACTGGTGTGATGGCCTTTGTGATGGGCATAGTCACCATGGTGAGGATGACAAGGAACATGCCAAAGAAGCTCACTGATGCCAACTTCTACTCCAACTCTGTTTTCTCTGGTGGGCAAGTCTCTTCTGACCAAATGACTAACCCTGCCATTTCCGCTCAAGAGTTCATGACTGTGATGAAACGCATGGCTGAGTTGGAAGAGAAAATGGGCAACATGAACCATACCACTTGCATGCCACCTGAGAAGGAAGAAATGCTGAATGCTGCTATTACCCGAGCAGATGCTTTGGAACAAGAACTCTTGGCAACCAAGAAGGCTTTGGAGGATTCACTTGCTCGGCAAGACGAGCTTTCGGCTTACATTGAGAAAAAGAAGAAGAAGAAGAAGTTGTTTGCTTGGTGA 1650 0.4515 MSGPLSPRPALDKSDRVGSLKKKLRDSLTRKNRRSSSKVMSVEIEDYRDAEESKAVDEFRQALVLDELLPERHDDYHMILRFLKARKFDVEKSKQMWSDMLQWRKEFGADTITEDFEFKELDEVLQYYPHGHHGVDKDGRPVYIERLGQVDATKLMQVTTMDRYIKYHVKEFERTFDLKFAACSIAAKKHIDQSTTILDVQGVGLKSFSKHARELITSLQKIDGDNYPETLNRMFIINAGSGFRMLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDASELPEFLGGTCTCADQGGCMRSDKGPWKDEEIVRMVQNDAHKCSRKCESPVADEKTVPEEPEATKKEAHLTSQLSSALAEAPPAKACNYEDFVPAADKNAWKKVEENEKFAVSKGGNETFGMADSCKIHEKVNSQIFTGVMAFVMGIVTMVRMTRNMPKKLTDANFYSNSVFSGGQVSSDQMTNPAISAQEFMTVMKRMAELEEKMGNMNHTTCMPPEKEEMLNAAITRADALEQELLATKKALEDSLARQDELSAYIEKKKKKKKLFAW* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g03324 549 Pfam CRAL/TRIO, N-terminal domain 67 99 IPR011074 -
Rops2g03324 549 SMART CRAL_TRIO_N_2 75 100 IPR011074 -
Rops2g03324 549 MobiDBLite consensus disorder prediction 327 346 - -
Rops2g03324 549 SUPERFAMILY CRAL/TRIO domain 120 315 IPR036865 -
Rops2g03324 549 PRINTS Cellular retinaldehyde-binding protein signature 247 266 - -
Rops2g03324 549 PRINTS Cellular retinaldehyde-binding protein signature 78 100 - -
Rops2g03324 549 PRINTS Cellular retinaldehyde-binding protein signature 280 289 - -
Rops2g03324 549 MobiDBLite consensus disorder prediction 14 36 - -
Rops2g03324 549 Coils Coil 502 529 - -
Rops2g03324 549 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 120 294 IPR001251 -
Rops2g03324 549 Pfam CRAL/TRIO domain 126 288 IPR001251 -
Rops2g03324 549 SMART sec14_4 120 291 IPR001251 -
Rops2g03324 549 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 16 541 - -
Rops2g03324 549 CDD SEC14 121 289 IPR001251 -
Rops2g03324 549 MobiDBLite consensus disorder prediction 1 36 - -
Rops2g03324 549 Gene3D - 108 320 IPR036865 -
Rops2g03324 549 Gene3D - 24 107 - -
Rops2g03324 549 FunFam SEC14 cytosolic factor 108 320 - -
Rops2g03324 549 SUPERFAMILY CRAL/TRIO N-terminal domain 49 116 IPR036273 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g03324 Rops-Chr2 61034066 61040701 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g03324 54 285 Acyl Lipid Metabolism Gene Families AT5G47730 28.049 1.79e-20 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g03324 K26544 - gmx:100785716 910.983
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g03324 2 61034066 61040701 Rops2g03324 2 61034066 61040701 ECH
Rops3g00530 3 6713169 6717811 Rops2g03324 2 61034066 61040701 ECH