Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01116 ATGAGTCCCAAGAGATCGTCTATGGCCATGATCGTTATCGTGTTCATGGTCTTTGCAGTGTCTTCGGCCTTGGATATGTCCATCATCTCCTATGACAAAACCCACCCAGACAAGACCACATGGAGGAGTGACGAGGAGGTATTGAGTATATACGAACAGTGGCTTGTGAAGTATGGCAAGGTCTACAATGCCCTCGGCGAGAAGCATAAGAGATTCGAGATCTTTAAAGACAACCTCAGGTTCATCGATGAGCACAATGCTGAGAACCGGACATACAAGGTGGGGTTGAACCGGTTCGCTGATCTTAGCGACCAGGAGTACCGGTCAATGTACCTGGGATTCAAGATTGACTCTAATAAGTGGATGGCCAAGGTCAACATCACAAGCAACCGTTATGCTCCGCGTGTCGGTGATAATTTGCCAGAATCTGTTGATTGGAGGAAGGAATTTGCTGTCACCAGAGTCAAAGACCAAGGAAAATGCGAGGGCTGCTGGGCATTTTCAGCAATTGCTGCCGTTGAAGGGATTAATAAGATAGCAACAGGCGATCTGATTTCACTATCAGAGCAAGAACTGCTGGACTGTGACAGAACGATTAATGCAGGATGCGATGGCGGAGTTATGGCCTACGCCTTTGAGTTCATCATAGAAAATGGTGGTATTGACACCGATGAGGATTACCCCTTTCTTGGCTTTGATAGTACATGTGATCAAAACAAGACAAATGCTAGAGTTGTTACAATTGATGCCTACGAAGCTGTTCCCGCCTACGATGAGTTAGCCTTGAAAAAAGCTGTAGCAAATCAGCCAGTAAGCCTCGCCGTTGAAGCATCTGGCAAGGAATTCCGGTTTTATGAATCAGGTATATTTACGGGAAACTGTGGGACAATATTAGACCATGGCGTTACAACTGTTGGGTATGGAACAGAAGATGGGGTTGATTATTGGATTGTGAAGAATTCATGGGGTGATAAGTGGGGAGAGGGTGGCTATATCAGATTGGAACGTAATGTGGCAACAAACAAGGCAGGCAAGTGTGGAATTGCAACTATGCCCTCCTATCCCATAAAGAAAGGCCCAAATCCCACAATGCGTTTACCATATCCTCCTTTAGCACCAGATGACACTCCGGCCAGAGCCATATAG 1146 0.4616 MSPKRSSMAMIVIVFMVFAVSSALDMSIISYDKTHPDKTTWRSDEEVLSIYEQWLVKYGKVYNALGEKHKRFEIFKDNLRFIDEHNAENRTYKVGLNRFADLSDQEYRSMYLGFKIDSNKWMAKVNITSNRYAPRVGDNLPESVDWRKEFAVTRVKDQGKCEGCWAFSAIAAVEGINKIATGDLISLSEQELLDCDRTINAGCDGGVMAYAFEFIIENGGIDTDEDYPFLGFDSTCDQNKTNARVVTIDAYEAVPAYDELALKKAVANQPVSLAVEASGKEFRFYESGIFTGNCGTILDHGVTTVGYGTEDGVDYWIVKNSWGDKWGEGGYIRLERNVATNKAGKCGIATMPSYPIKKGPNPTMRLPYPPLAPDDTPARAI* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01116 381 FunFam Cysteine protease 1 27 358 - -
Rops10g01116 381 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 298 308 IPR025660 -
Rops10g01116 381 Pfam Cathepsin propeptide inhibitor domain (I29) 51 107 IPR013201 -
Rops10g01116 381 SMART Inhibitor_I29_2 51 107 IPR013201 -
Rops10g01116 381 PRINTS Papain cysteine protease (C1) family signature 300 310 IPR000668 GO:0006508|GO:0008234
Rops10g01116 381 PRINTS Papain cysteine protease (C1) family signature 315 321 IPR000668 GO:0006508|GO:0008234
Rops10g01116 381 PRINTS Papain cysteine protease (C1) family signature 158 173 IPR000668 GO:0006508|GO:0008234
Rops10g01116 381 Pfam Papain family cysteine protease 140 356 IPR000668 GO:0006508|GO:0008234
Rops10g01116 381 SMART pept_c1 140 356 IPR000668 GO:0006508|GO:0008234
Rops10g01116 381 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 315 334 IPR025661 -
Rops10g01116 381 MobiDBLite consensus disorder prediction 360 381 - -
Rops10g01116 381 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 44 351 IPR013128 GO:0008234
Rops10g01116 381 SUPERFAMILY Cysteine proteinases 43 356 IPR038765 -
Rops10g01116 381 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 158 169 IPR000169 -
Rops10g01116 381 Gene3D Cysteine proteinases 30 358 - -
Rops10g01116 381 CDD Peptidase_C1A 141 355 IPR039417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01116 Rops-Chr10 23171011 23173887 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01116 K25900 - gmx:100807362 558.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01116 10 23171011 23173887 Rops2g04495 2 82152863 82154881 ECH
Rops10g01116 10 23171011 23173887 Rops3g00513 3 6528153 6529992 ECH
Rops10g01116 10 23171011 23173887 Rops10g01116 10 23171011 23173887 ECH