Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00483 ATGGCCTCTGCATCAGCATCTTTGCTCAAGTCTTCTCCTGTTCTTGACAAGTCTGAGTGGGTGAAGGGCCAAACCCTTCGCCAACCTTCTGTATCTGTTGTGAGATGCAACCCCACCACCCCTTCAGCCCTCACCATCAGAGCTGGTTCCTATGCTGATGAGCTTGTTAAGACTGCGAAAACAGTTGCTTCACCAGGGCGTGGTATTCTGGCCATGGATGAGTCCAATGCTACCTGTGGGAAGCGTTTGGCTTCAATTGGGTTAGAGAACACTGAAGCTAACCGCCAGGCATACCGTACCCTTCTTGTGACAGTTCCAGGGCTTGGCCAGTACATCTCCGGTGCCATTCTCTTTGAGGAAACTCTCTACCAATCCACAACTGATGGCAGGAAGATTGTTGATGTACTTATTGAGCAAAACATTGTTCCCGGTATTAAAGTTGACAAGGGTTTGGTGCCCCTGGCTGGTTCCAACGATGAGTCATGGTGCCAAGGTCTTGATGGTCTTGCCTCTCGCACAGCTGCATACTACCAGCAAGGTGCTCGGTTTGCCAAATGGCGTACTGTTGTGAGCATCCCCAATGGTCCCACTGCTCTGGCAGTTAAGGAAGCAGCTTGGGGTCTAGCTCGCTATGCTGCAATTGCTCAGGACAATGGGTTGGTCCCAATTGTGGAGCCAGAGATCTTGCTTGATGGGGAGCATGGTATTGATAGGACTTTCGAAGTAGCCCAAAAGGTGTGGGCTGAGGTTTTCTTCTACCTTGCTGAGAACAATGTCCTGTTTGAGGGTATTCTCCTCAAGCCTAGCATGGTTACCCCTGGAGCTGAGTGCAAGGACAAGGCCTCTCCTACAAAGGTTGCTGATTACACCCTCAAGCTCCTTCACAGGAGAATTCCCCCTGCTGTCCCTGGAATTATGTTTTTGTCTGGTGGACAATCTGAGGTTGAAGCAACACTCAATTTGAATGCCATGAACCAATCTCCAAACCCATGGCATGTGTCATTCTCATATGCCAGAGCTCTTCAAAATACTGCCTTGAAGACATGGGGTGGTCGCCCTGAGAATGTGAAGGCGGCACAAGATGCACTCCTTTTCCGTGCTAAGTCCAACTCACTTGCTCAGCTTGGAAAGTACACTGGTGAGGGTGAATCTGAGGAAGCCAAGAAGGAGTTGTTCGTCAAAGGATACTCCTATTAG 1197 0.4979 MASASASLLKSSPVLDKSEWVKGQTLRQPSVSVVRCNPTTPSALTIRAGSYADELVKTAKTVASPGRGILAMDESNATCGKRLASIGLENTEANRQAYRTLLVTVPGLGQYISGAILFEETLYQSTTDGRKIVDVLIEQNIVPGIKVDKGLVPLAGSNDESWCQGLDGLASRTAAYYQQGARFAKWRTVVSIPNGPTALAVKEAAWGLARYAAIAQDNGLVPIVEPEILLDGEHGIDRTFEVAQKVWAEVFFYLAENNVLFEGILLKPSMVTPGAECKDKASPTKVADYTLKLLHRRIPPAVPGIMFLSGGQSEVEATLNLNAMNQSPNPWHVSFSYARALQNTALKTWGGRPENVKAAQDALLFRAKSNSLAQLGKYTGEGESEEAKKELFVKGYSY* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00483 398 Pfam Fructose-bisphosphate aldolase class-I 54 398 IPR000741 GO:0004332|GO:0006096
Rops3g00483 398 ProSitePatterns Fructose-bisphosphate aldolase class-I active site. 259 269 IPR029768 -
Rops3g00483 398 FunFam Fructose-bisphosphate aldolase 36 397 - -
Rops3g00483 398 SUPERFAMILY Aldolase 44 398 - -
Rops3g00483 398 Gene3D Aldolase class I 33 397 IPR013785 -
Rops3g00483 398 CDD FBP_aldolase_I_a 52 378 - -
Rops3g00483 398 NCBIfam fructose-bisphosphate aldolase class I 54 374 - -
Rops3g00483 398 PANTHER FRUCTOSE-BISPHOSPHATE ALDOLASE 49 398 IPR000741 GO:0004332|GO:0006096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00483 Rops-Chr3 6242880 6245832 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00483 51 398 Miscellaneous Gene Families AT3G52930 55.398 1.05e-133 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00483 K01623 - gmx:100775844 758.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g00483 3 6242880 6245832 Rops3g00483 3 6242880 6245832 ECH
Rops10g02642 10 45752704 45755176 Rops3g00483 3 6242880 6245832 ECH