Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00433 ATGGGTCGCCTTGTTCTCTTTCTCATTATTCTCACCCTCGTTGCATTATCTTTCCTCTCAGAGGTACAATCAGCATCCTTCAAGATTGTGAACAAGTGCCGTTACACGATATGGCCGGGATTACTCTCCGGCGCCACCTCGCCGGCGCTTCCCACCACCGGATTCGCCCTCAAGAGCGGCCAGTCAAAGACCATAAACATCCCGAAATCTTGGTCGGGTCGGTTATGGGCACGGACCCTCTGCGGCCAAGACTCCGACGGAAAATTCTCTTGCGTCACCGCCGATTGTGGCTCCGGCAAAGTAGAGTGCGCCGGCGGCGCCAAACCTCCGGCCACGTTGGCGGAGTTCACCTTGAACGGAGCTGACGGGTTGGACTTTTACGACGTGAGTTTGGTCGACGGTTACAACCTTCCGATGCTGATCGTGGCTATGGGAGGCACCAGAGGTGGCTGTAGCGCCACCGGGTGTCTGGTTGACCTCAACGGCGGCTGTCCGGCGGACCTCAAGGTTGCGCGTGCAAATGGGACACGTGGCAGCGTCGCTTGTAGGAGCGCGTGTGAGGCTTTTGGTGATCCTCGTTATTGCTGTAGTGAAGCGTACTCCACGCCTGACACGTGTGCTCCTTCGGTTTATTCGCAGTTCTTTAAACATGCTTGCCCACGCGCTTATAGCTACGCGTATGATGACAAGACCAGCACCTACACATGTGCCGCTGCTAACTATTTGATCATATTTTGCCCCTTACCCTATACGAGCCAAAAACTGTTGGGGGCACGGAAAGATGGCGCACAGCTTCCTCTGGTAAACAAGACTATGATGTACTTATCAAGACTACAATCAGGAGGAGGTTCATCAACAGGTAGATAG 867 0.5433 MGRLVLFLIILTLVALSFLSEVQSASFKIVNKCRYTIWPGLLSGATSPALPTTGFALKSGQSKTINIPKSWSGRLWARTLCGQDSDGKFSCVTADCGSGKVECAGGAKPPATLAEFTLNGADGLDFYDVSLVDGYNLPMLIVAMGGTRGGCSATGCLVDLNGGCPADLKVARANGTRGSVACRSACEAFGDPRYCCSEAYSTPDTCAPSVYSQFFKHACPRAYSYAYDDKTSTYTCAAANYLIIFCPLPYTSQKLLGARKDGAQLPLVNKTMMYLSRLQSGGGSSTGR* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00433 288 SMART tha2 27 247 IPR001938 -
Rops3g00433 288 CDD TLP-PA 26 246 - -
Rops3g00433 288 PRINTS Pathogenesis-related protein signature 237 246 IPR001938 -
Rops3g00433 288 PRINTS Pathogenesis-related protein signature 87 116 IPR001938 -
Rops3g00433 288 PRINTS Pathogenesis-related protein signature 125 141 IPR001938 -
Rops3g00433 288 PRINTS Pathogenesis-related protein signature 74 85 IPR001938 -
Rops3g00433 288 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Rops3g00433 288 Gene3D Thaumatin 25 247 IPR037176 -
Rops3g00433 288 ProSiteProfiles Thaumatin family profile. 24 247 IPR001938 -
Rops3g00433 288 PANTHER OS03G0233200 PROTEIN 13 247 IPR001938 -
Rops3g00433 288 FunFam THAUMATIN-LIKE PROTEIN 1 25 247 - -
Rops3g00433 288 ProSitePatterns Thaumatin family signature. 87 103 IPR017949 -
Rops3g00433 288 SUPERFAMILY Osmotin, thaumatin-like protein 26 247 IPR037176 -
Rops3g00433 288 Pfam Thaumatin family 31 247 IPR001938 -
Rops3g00433 288 PIRSF PR5 1 278 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00433 Rops-Chr3 5321917 5324518 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00433 9 247 Receptor kinase-like Gene Family AT5G38280 51.653 8.22e-88 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00433 - - ccaj:109798931 542.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g00433 3 5321917 5324518 Rops3g00433 3 5321917 5324518 ECH
Rops3g00433 3 5321917 5324518 Rops2g03248 2 59398833 59400962 ECH