Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g05254 ATGGCAACTGAGAGTCCAATTAGAATCTCTGAAGCTGGGGGGAAATGGCCATCTCTTAAGGAAGCTGCAACTTTTGGTTCACCATCTCTTAACATGGCAACAGAGGATTTGGGTATACTTTTGAAGGGCCACAGGTTTCATGGCAGTGGAAAGGATGTGGTACCCAATCGCAGTGGCAGTGCACCCCCAAGCATGGAAGGCTCATTTCTGGCCACAAAAAACCTATTATCCCAGAACACCGCCCACAATGCAAGCTTGGTGACTCTGAACAGAGCTATTCCAACGTATGATACCGGTAAAGGTTCTTTTCATTTGTCACGAGGAACTCTTGCAACACCCAAGGAGGAGTCTGAGGATGATTCAACCCAACAGCTGTATGATAACGAGTCTGACAAGACTAGTGGAATATGGCATATACAGGATGCAGCTTTAATGACATCTCAGCACAAAAATGAAGATCTTCCCCACACCATGTCACCTGTATATATTAAGTCTCTTGGAGTGGTGGATGAACTAATTGACTTAGATGCCGGTTCCAGTTCTTCTCATGACCCTCCTGTCACCACACCAGATTCTGCAAACCCTACCGTAGGTGCAGATTATATAAGGCTGTCAACAAATGTTGATTCCCCTGCCCCTGTCACAAGCTCATCATCTCTTGAATCCACTGGAAACGTGGGCTTTAGTAACTTAGATGTTACAATCATTGAGTCTCAATTAAGGGCTCTTAGTGTATCTAATCTACCAAATTCAGAAAGCCAGAGTTATGAAGACAAGTGGAAGAACAGCTGCCAGAATAATTTGATTCAACATCAGCAACAAAACAATCCATGTGAAGGTCCTAGCACTAACTCTCAAAATGAAAAATGTACATATGTTGGTATGGAACAGTTTCATCACAATCCCAGCAAGTTCCCTTCTGGTGTCCAGCCAGTACTGCAGTCGTCGGGGTTTACACCACCTCTACATGCCACAACAGCAGCTTATATGACCACAACAAATCCATTTTACCCTAATTTGCAGGCTTCAGGCATATATTCTCCGCAGTATGTAGGTGGATACCCTTTTAATCCCTCAGCTATTCCTCCATACTTTGCTGCATACCCTCCTCATGGTGCTGTACCACTTGTTGTTGATGGGGCTACTGGTTCCAGTTTTACTCTGCAAACTCCAGGGGTTTCTGCTGGGGGAAGCATTTCTCATGGAGCTGAAATGTTACCTGCAAGCAAGTTCCTTGGACAATTTGGATTTCCACTTCAGCCTTCTTTTGGTGATCCTGTTTACATGCAATATCATCAGCAGCCTTTTGTGGAGGGATATGATGTTTCTGGTCATTTGCTGGCACCCAGAGCGAGTGTTGGTAGCCAATTTGGCCCTTTTGATCCCCAAAAAAGGCCCAATAGTGGTGCCTATTTGGATGACAAAAAATTACATCATCAGAGAAGTGGTGCTAATTCAAACTCTAGTAGAGGTGGGCCAGTGGTTCCAAGTTATTTTGGACACCCGCAAAATATGGGTTTTGTAATGCAGTATCCAAATTCCCCACTTTCTAGTCCAGTTTTGTCAGGATACCCAGAAGGCAGTCCTGGCCTTCCGCGAGGAAGGAATGAAATGAAACTTTCTCCAGTTTCTGGTAGAAATGAAGGTATATTATCTGGATGGCAAGGTCAAAGAGCCTTTGACAGTTCTCATGACCCCAAAATTGTAAATTTTCTTGAAGAGTTAAAATCTGGCAAAGGTCGCAGATTTGAGTTATCTGATATTATTGGATATATTGTTGAATTTAGCGCTGATCAGCATGGGAGCCGATTTATCCAGCAGAAGTTGGAAAGTTGTGGCGTTGAAGAGAAGGCATTGGTGTTCAAAGAGGTTCTTCCACATGCTTCTAAGTTAATGACTGATGTATTTGGTAACTATGTAATCCAGAAGTTTTTTGAGTATGGAAGCCCTGAGCAGAGGAAGGAACTTGCAAATCAACTTGTTGGTCAGATACTGCCTTTAAGTCTGCAGATGTATGGCTGTCGTGTAATCCAAAAGGCACTTGAGGCTATTGATCTTGAACAAAAGGTTCAGCTTGTTCATGAGCTAGATGGAAATGTTATGAGATGTGTTCGTGACCAAAATGGGAATCATGTAATACAGAAGTGCATTGAATCTATTCCAACCAAAAAAATTGGCTTTATAATATCTGCATTCCGTGGTCAAGTTGCTCTTCTATCTATGCATCCTTATGGTTGCCGAGTCATACAGAGAGTTCTTGAGCATTGCTCAGATGAGGATCAATGTCAGTTTATTGTGGATGAAATCTTGGATTCAGTTTGTGCTCTTGCTCAGGACCAGTATGGTAATTATGTTACTCAGCATGTGTTGGAGAGGGGAAATCCTGAGGAACGGGGCCAAATTATTAGCAAGTTGTCAGGACATATTGTACAATTGAGCCAGCATAAGTTTGCATCAAATGTTGTTGAGAAATGTTTGGAGTATGGTGATACCACTGAAAGGCAGTGGTTGATTGCAGAGATTGTTGAGCATGACGAACAAAATGATAATTTATTGACAATGATGAAAGACCAATTTGCAAATTATGTTGTCCAGAAGGTTATTGAGATCTGTTCTGAAAATCAGAGAGCAATGTTACTTTCTCGCATAAGAGTTCATGCTCAAGCTTTGAAGAAATACACTTATGGAAAACACATTGTGGCTCGGTTTGAACCGTTTCTTGGAGAAGAGCACCAAACACCTGGATCGTGA 2751 0.4242 MATESPIRISEAGGKWPSLKEAATFGSPSLNMATEDLGILLKGHRFHGSGKDVVPNRSGSAPPSMEGSFLATKNLLSQNTAHNASLVTLNRAIPTYDTGKGSFHLSRGTLATPKEESEDDSTQQLYDNESDKTSGIWHIQDAALMTSQHKNEDLPHTMSPVYIKSLGVVDELIDLDAGSSSSHDPPVTTPDSANPTVGADYIRLSTNVDSPAPVTSSSSLESTGNVGFSNLDVTIIESQLRALSVSNLPNSESQSYEDKWKNSCQNNLIQHQQQNNPCEGPSTNSQNEKCTYVGMEQFHHNPSKFPSGVQPVLQSSGFTPPLHATTAAYMTTTNPFYPNLQASGIYSPQYVGGYPFNPSAIPPYFAAYPPHGAVPLVVDGATGSSFTLQTPGVSAGGSISHGAEMLPASKFLGQFGFPLQPSFGDPVYMQYHQQPFVEGYDVSGHLLAPRASVGSQFGPFDPQKRPNSGAYLDDKKLHHQRSGANSNSSRGGPVVPSYFGHPQNMGFVMQYPNSPLSSPVLSGYPEGSPGLPRGRNEMKLSPVSGRNEGILSGWQGQRAFDSSHDPKIVNFLEELKSGKGRRFELSDIIGYIVEFSADQHGSRFIQQKLESCGVEEKALVFKEVLPHASKLMTDVFGNYVIQKFFEYGSPEQRKELANQLVGQILPLSLQMYGCRVIQKALEAIDLEQKVQLVHELDGNVMRCVRDQNGNHVIQKCIESIPTKKIGFIISAFRGQVALLSMHPYGCRVIQRVLEHCSDEDQCQFIVDEILDSVCALAQDQYGNYVTQHVLERGNPEERGQIISKLSGHIVQLSQHKFASNVVEKCLEYGDTTERQWLIAEIVEHDEQNDNLLTMMKDQFANYVVQKVIEICSENQRAMLLSRIRVHAQALKKYTYGKHIVARFEPFLGEEHQTPGS* 917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g05254 916 MobiDBLite consensus disorder prediction 102 131 - -
Rops2g05254 916 FunFam Pumilio homolog 1 isoform 2 566 913 - -
Rops2g05254 916 Gene3D - 568 909 IPR011989 -
Rops2g05254 916 ProSiteProfiles Pumilio RNA-binding repeat profile. 623 658 IPR001313 GO:0003723
Rops2g05254 916 Pfam Nucleic acid binding protein NABP 190 586 IPR012940 -
Rops2g05254 916 ProSiteProfiles Pumilio RNA-binding repeat profile. 804 839 IPR001313 GO:0003723
Rops2g05254 916 ProSiteProfiles Pumilio RNA-binding repeat profile. 768 803 IPR001313 GO:0003723
Rops2g05254 916 SMART pum_5 695 730 IPR001313 GO:0003723
Rops2g05254 916 SMART pum_5 846 881 IPR001313 GO:0003723
Rops2g05254 916 SMART pum_5 659 694 IPR001313 GO:0003723
Rops2g05254 916 SMART pum_5 623 658 IPR001313 GO:0003723
Rops2g05254 916 SMART pum_5 804 839 IPR001313 GO:0003723
Rops2g05254 916 SMART pum_5 731 767 IPR001313 GO:0003723
Rops2g05254 916 SMART pum_5 768 803 IPR001313 GO:0003723
Rops2g05254 916 SMART pum_5 587 622 IPR001313 GO:0003723
Rops2g05254 916 ProSiteProfiles Pumilio RNA-binding repeat profile. 695 730 IPR001313 GO:0003723
Rops2g05254 916 ProSiteProfiles Pumilio RNA-binding repeat profile. 731 767 IPR001313 GO:0003723
Rops2g05254 916 MobiDBLite consensus disorder prediction 181 198 - -
Rops2g05254 916 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 567 907 IPR033133 GO:0003723
Rops2g05254 916 ProSiteProfiles Pumilio RNA-binding repeat profile. 659 694 IPR001313 GO:0003723
Rops2g05254 916 Pfam Pumilio-family RNA binding repeat 628 660 IPR001313 GO:0003723
Rops2g05254 916 Pfam Pumilio-family RNA binding repeat 706 723 IPR001313 GO:0003723
Rops2g05254 916 Pfam Pumilio-family RNA binding repeat 850 883 IPR001313 GO:0003723
Rops2g05254 916 Pfam Pumilio-family RNA binding repeat 592 625 IPR001313 GO:0003723
Rops2g05254 916 Pfam Pumilio-family RNA binding repeat 808 841 IPR001313 GO:0003723
Rops2g05254 916 Pfam Pumilio-family RNA binding repeat 735 770 IPR001313 GO:0003723
Rops2g05254 916 Pfam Pumilio-family RNA binding repeat 663 696 IPR001313 GO:0003723
Rops2g05254 916 Pfam Pumilio-family RNA binding repeat 773 805 IPR001313 GO:0003723
Rops2g05254 916 CDD Pumilio 582 902 IPR033712 GO:0003723
Rops2g05254 916 SUPERFAMILY ARM repeat 572 903 IPR016024 -
Rops2g05254 916 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 219 904 - -
Rops2g05254 916 ProSiteProfiles Pumilio RNA-binding repeat profile. 840 881 IPR001313 GO:0003723
Rops2g05254 916 ProSiteProfiles Pumilio RNA-binding repeat profile. 587 622 IPR001313 GO:0003723
Rops2g05254 916 MobiDBLite consensus disorder prediction 176 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g05254 Rops-Chr2 93789244 93800470 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g05254 K17943 - gmx:100819166 1399.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g05254 2 93789244 93800470 Rops11g02877 11 50385764 50391972 PCT