Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02877 ATGAAAACAAAGCAAAGGAAGGAAGTTCAGAAACCTTGGAAATGCAATCAAAATCCTTACTTTGAGGCTGGTGACCGTGTGGCATATAATAATGAGAAGGAGGGGATCATTGAGTGCTTGAAAAGGGAAGTAGGTGATTTAGATGTTGGAGTTTCTTCACTCCCTGATTGGATACCGACCAAAGTGATGCTTACCACTTGGCTTGCTGATGCACTTGAGTATGAACTGTGGGTGGGATGGGATGGTTCCTCTGCTTATAGCATCTATTATTCTGATCTTCCATGGCCCATAGGAAAGGTCCTGTTTTGGAAGAAAGCTAACTGGGTAAAGCAGAAACATGAGATAAGTAAAGACAATGCTGAAGTAAAGGAAGAAGAGGCCATCGAGCTTGGATGCCATGTTTCTTGCACATGCATTAGTTGTTCTTCAAGCTTTACCTTTTCTGGGGACGATTGTGTGGCTGTCAAAAGTGGATGGAATGAGTATGGCATAAAGTTTGGGTGGCCCACCAAACAACTAGTGATCAGAAGGTTGACATGCATTTCACCATACAGTGCAACCATTGCCTTGGGAAGTGAGATGTCTGGTGGGATCCAGGATGTGAGAGCTGAGGATATGACAGCTATCCAAACAGAATCAGGAGTTAGAATAAAAACAGCAGTTGGGAGAGGAGGGTATGTGAAGGACATATATGTGAAGAGAATGACCATGCACACTATGAAATGGGCATTTAAGATGACAAGAAACTACAATTCGATAGCTGATAGCCACTATGACCCTAATGCCTTGCCTGAGATCACAAACATCAACTATAGAGATATTGTGGCTGAGAATGTCACCATAGCAGCTAGGTTTGAAGGAATCTCCAATGACCCGTTTAAAGGAATCTGCATTGCTAATGTGACACTAGGGATGACAGCCAAGGCCAAGAAAAGGCCATGGACTTGTACTGATATCGAAAGGATCACAAGTGGGGTCACCCCTCCACCGTGTGATTTGTTACCTGATCAAGGGCCAGAGAAAATCACAACATGTGATTTCCCAGCAGAGAAGCTACCTATTGACATGTTGAAGCTTAAGAAATGTACTTACAGCATGACACATGTTGGAATGTATTAG 1119 0.4316 MKTKQRKEVQKPWKCNQNPYFEAGDRVAYNNEKEGIIECLKREVGDLDVGVSSLPDWIPTKVMLTTWLADALEYELWVGWDGSSAYSIYYSDLPWPIGKVLFWKKANWVKQKHEISKDNAEVKEEEAIELGCHVSCTCISCSSSFTFSGDDCVAVKSGWNEYGIKFGWPTKQLVIRRLTCISPYSATIALGSEMSGGIQDVRAEDMTAIQTESGVRIKTAVGRGGYVKDIYVKRMTMHTMKWAFKMTRNYNSIADSHYDPNALPEITNINYRDIVAENVTIAARFEGISNDPFKGICIANVTLGMTAKAKKRPWTCTDIERITSGVTPPPCDLLPDQGPEKITTCDFPAEKLPIDMLKLKKCTYSMTHVGMY* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02877 372 Gene3D - 119 325 IPR012334 -
Rops11g02877 372 PANTHER PECTIN LYASE-RELATED 134 355 - -
Rops11g02877 372 Pfam Glycosyl hydrolases family 28 135 320 IPR000743 GO:0004650|GO:0005975
Rops11g02877 372 SUPERFAMILY Pectin lyase-like 131 364 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02877 Rops-Chr11 50385764 50391972 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02877 135 367 Glycoside Hydrolase AT3G61490 66.946 4.78e-111 331
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02877 - - gmx:100776827 417.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g05254 2 93789244 93800470 Rops11g02877 11 50385764 50391972 PCT